Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq684 760 0.0 >seq684 Length=114989 Score = 760 bits (842), Expect = 0.0 Identities = 750/961 (78%), Gaps = 10/961 (1%) Strand=Plus/Plus Query 163949 ACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTGATGATTCCCTGCCTGCTGG-C 164007 || || || ||||| || ||||||||||||| || | ||||| |||| | | | | Sbjct 68484 ACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGAT-CCCTACATTATTAAC 68542 Query 164008 AGCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCCTCCTGTGGACATCGATGGCAT 164067 ||| || | || ||||||||||| ||||||| || ||||| || || |||||||| || Sbjct 68543 AGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTAT 68602 Query 164068 CCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTAT 164127 ||| ||||| || ||||| || || | || ||||||||||| ||| | ||||| ||||| Sbjct 68603 CCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTAT 68662 Query 164128 CCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTG-- 164185 || |||||||||||| ||| | ||||||||||| | |||||||| || ||||| Sbjct 68663 TCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGC--GTCTGTA 68720 Query 164186 GACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGC 164245 ||||||||||| |||||||||||||||| |||||| || || || |||||| | | || Sbjct 68721 GACGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGT 68780 Query 164246 AT--CTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTT 164303 | || |||| ||||||| ||||| ||||||||| |||||| | || |||||||||| Sbjct 68781 GTAGCT-TGCT-ACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTT 68838 Query 164304 GGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATC 164363 |||||| |||||| | ||| ||||| || |||||||| |||||||| ||| | | || | Sbjct 68839 GGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACC 68898 Query 164364 CTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACT 164423 | |||| |||||| |||||||||| |||||| | || |||||||| || ||||||| Sbjct 68899 CAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACT 68958 Query 164424 ACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCG 164483 |||||| || ||||| || || |||||||| || |||||||| ||||||||| || | Sbjct 68959 TCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTG 69018 Query 164484 TAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCTT 164543 | || ||||||||||| || ||| | |||||||||||||||||||| || || || ||| Sbjct 69019 TTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTCTTGTAACATCTA 69078 Query 164544 CGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGGTCAGG 164603 | | ||||| || || || || ||||| |||||||| ||||| || | Sbjct 69079 GTTTAATCCGTGAAACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAG 69138 Query 164604 AAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAAT 164663 |||||||||| ||||||||||| || || |||||||||||||| ||| | || ||||||| Sbjct 69139 AAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAAT 69198 Query 164664 ACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCG 164723 |||| ||||||||||| ||| | | ||||||||| | || || ||||| ||||| | Sbjct 69199 ACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAG 69258 Query 164724 GTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACT 164783 |||||||||| |||||||| || ||||||| |||||||||||| | ||||| ||||||| Sbjct 69259 GTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACT 69318 Query 164784 TCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCA 164843 ||||||| || | | ||| | || ||||||||| ||||||| ||||| ||| || ||| Sbjct 69319 TCAACCAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCA 69378 Query 164844 ACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCG 164903 ||||||||| | | || |||||||| |||||||| ||||| || |||||||||||||| | Sbjct 69379 ACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAG 69438 Query 164904 A 164904 | Sbjct 69439 A 69439 Score = 556 bits (616), Expect = 1e-153 Identities = 733/1008 (73%), Gaps = 6/1008 (1%) Strand=Plus/Plus Query 165165 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 165224 || |||||| | ||| |||| |||||||| ||| |||| ||||| || ||| | | ||| Sbjct 37918 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 37977 Query 165225 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 165284 || || || | |||||| |||| || ||| | || || |||||||| || || |||| Sbjct 37978 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 38037 Query 165285 TATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTTACTGCGGCAGT 165343 || || || ||| | || ||| || | ||||| ||||| ||| | |||| || || Sbjct 38038 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAA-CTTCTTAACTGTAGCTGT 38096 Query 165344 TTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCA 165403 || || || ||| | |||||||||||| | | | ||||||| || ||| | || Sbjct 38097 ATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACA 38156 Query 165404 AGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGG 165463 ||| || || | || ||| ||| | || ||| | ||||||||||| || | || || Sbjct 38157 AGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGG 38216 Query 165464 AGCCTTTGCACTTATAGGTTTCATGCTT-CGCCAGTTTGAACTGGCACGACTTATCGGTA 165522 || |||| | | || || ||| || || || || |||||| | || || ||| | |||| Sbjct 38217 GGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTA 38275 Query 165523 TTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTC 165582 ||||||| || ||||| ||||| || || || ||||| || ||||||||| ||| || Sbjct 38276 TTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCT 38335 Query 165583 TTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAA 165642 | || |||||| | |||||| | |||||||| || || || || || ||||| | Sbjct 38336 TAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTA 38395 Query 165643 TCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACA 165702 | ||||||||||| | ||| | ||||| |||||||||||||| || ||||| || |||| Sbjct 38396 TTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACA 38455 Query 165703 TGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAG 165762 ||||||| |||||||| || ||||| || ||| | | ||||| |||||||| | ||| | Sbjct 38456 TGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTG 38515 Query 165763 TAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATA-GT 165821 |||| || || || | ||||||||||| || || || ||| || ||| | | Sbjct 38516 TAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGC-TTTCACACCA 38574 Query 165822 ACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTT 165881 || || ||| ||||||||||| ||||| || || ||| | ||||||||||| |||||| Sbjct 38575 ACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTTT 38634 Query 165882 GGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATG 165941 ||| ||||||| || || ||||||||||| ||||| ||| | |||||||| || | Sbjct 38635 GGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACA 38694 Query 165942 GGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGAT 166001 || | |||||||||||| ||||||| | ||| | ||| | || | | || ||||| Sbjct 38695 GGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGAC 38754 Query 166002 TTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAA 166061 ||||| ||||| ||| || | || ||||| |||||||| |||||||| |||||||| ||| Sbjct 38755 TTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAA 38814 Query 166062 AACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAG 166121 || ||| | | || ||||| | | | ||| |||| | |||||||| ||||| Sbjct 38815 AATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAA 38874 Query 166122 AACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 || ||||| ||||| || || || || ||| | || ||||| |||||| Sbjct 38875 AATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAA 38922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557649632054880