Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq684 715 0.0 >seq684 Length=114989 Score = 715 bits (792), Expect = 0.0 Identities = 732/952 (77%), Gaps = 4/952 (0%) Strand=Plus/Plus Query 177625 AATCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCT 177684 || ||| | || |||||||||||||||| | ||||||||||| | | | ||| | Sbjct 68490 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 68549 Query 177685 ATCTGTTTCATCGTCGCTTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAA 177744 | ||| |||||| |||||||| |||| || ||||| || || ||||| || ||||||||| Sbjct 68550 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 68609 Query 177745 CCCGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCT 177804 || || ||||| || || | || || |||||||| || | ||||| ||| |||| | Sbjct 68610 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 68669 Query 177805 TCTAACGCTATTGGTCTCCACTTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGG 177864 ||||||||||||||| | |||||||| || | |||||||| || ||| | || || ||| Sbjct 68670 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 68729 Query 177865 CTCTACAATGGTGGTCCTTTCCAACTCGTTATCTTCCACTTCCTGATCG--GTATCTATG 177922 || ||||| |||||||||| |||||| || | || |||||| | | | ||| || || Sbjct 68730 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 68788 Query 177923 CATACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTG 177982 | |||||||| ||||| ||||||||| ||||| |||| |||||||| ||||| | | Sbjct 68789 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 68847 Query 177983 TAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTC 178042 |||| | ||| |||||||| || |||||| ||| |||||| | |||| || |||| | Sbjct 68848 TAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGAC 68907 Query 178043 AAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTG 178102 ||||| |||||||| | |||||| | |||||| ||| || ||||||| |||| | | Sbjct 68908 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAG 68967 Query 178103 TCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTG 178162 | ||||||||||| |||||||| || |||||||| ||||| ||| || || ||||||| Sbjct 68968 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 69027 Query 178163 TCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC 178222 | |||||||| ||| | |||||||| |||||||||||||| || || || | | | Sbjct 69028 TGTTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTCTTGTAACATCTAGTTTAATCC 69087 Query 178223 GTGAAACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGA 178282 ||||||| || | | | ||||| |||||||| || || ||||||||||| | Sbjct 69088 GTGAAACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAA 69147 Query 178283 CCTACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCT 178342 | ||||||||||| ||||| || |||||||| || || | ||||||||||||||| | Sbjct 69148 CTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTT 69207 Query 178343 TCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGT 178402 |||||||||| ||| | | ||||||||| | || || ||||| ||||| |||||||||| Sbjct 69208 TCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGT 69267 Query 178403 TCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGT 178462 | ||||||||||| ||||||| |||||||||||| | ||||| |||||||||||||| | Sbjct 69268 TAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACCAAT 69327 Query 178463 CCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTG 178522 | | | ||||| || || || | ||||| ||||| ||| || |||||||||||| Sbjct 69328 CAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCTG 69387 Query 178523 GTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTTGA 178574 | | ||||||||||| |||||||| ||||| || |||||||||||||| || Sbjct 69388 ATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 69439 Score = 589 bits (652), Expect = 3e-163 Identities = 744/1020 (73%), Gaps = 2/1020 (0%) Strand=Plus/Plus Query 178839 TTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGT 178898 ||||| || ||||||||||| | || || ||||| ||||| ||| |||||||||||||| Sbjct 37906 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGT 37965 Query 178899 CTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTC 178958 ||| | | || || || || | | ||| | || || ||| | || || || || || Sbjct 37966 CTTTTATTATTTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTT 38025 Query 178959 GTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTT 179018 || || || ||||| || || || | |||||||| || | |||||||| || ||| | Sbjct 38026 GTTACATCTTGGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAACTTCTTA 38085 Query 179019 ACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGT 179078 |||| ||||||||||| ||||| | | | || ||||| | | | ||||||| Sbjct 38086 ACTGTAGCTGTATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGA 38145 Query 179079 CCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTG 179138 ||||| || || |||||||| || ||||| ||| | || ||| ||||| ||||||| Sbjct 38146 CCAGAGGCACAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTC 38205 Query 179139 GCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTT-CGGCAGTTTGAAATCGCACG 179197 || | || || || || | | || || ||| || || || || |||||||| || || Sbjct 38206 GCATTACATGGGGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCG 38264 Query 179198 TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGT 179257 ||| || ||||||||||| || |||||||| || ||||| || || || || || || || Sbjct 38265 TCTTGTAGGTATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGT 38324 Query 179258 GTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGG 179317 ||||| || | || |||||| | ||||| | ||||||||||| || ||||| Sbjct 38325 TTCTGTATTCTTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGG 38384 Query 179318 AGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAA 179377 ||||||||| |||||||| |||||| | ||| |||| || ||||| |||||||| || || Sbjct 38385 AGTTGCAGCTATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAA 38444 Query 179378 CCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCA 179437 || ||||||||||||||||||||||| || | || || ||| | | | ||| ||||| Sbjct 38445 TCCATTCCACATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCA 38504 Query 179438 TGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGC 179497 ||| ||||| ||||| |||||| | || ||||| |||| | ||||||||| || Sbjct 38505 TGGAGCTACTGTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGC 38564 Query 179498 ATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTC 179557 ||| || |||||| ||| || || ||||| ||||| || || ||| | |||||||| Sbjct 38565 TTTCACACCAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTC 38624 Query 179558 TCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGT 179617 ||| || |||||| | || || || || |||||||| |||||||| ||||| ||||| Sbjct 38625 TCAAATTTTTGGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGT 38684 Query 179618 TCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTAG 179677 ||| || | ||| | ||||| | ||||||| | ||| | ||| | ||| | || Sbjct 38685 TCCAGTAACAGGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAG 38744 Query 179678 AGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTT 179737 ||| ||||||||||| || |||||| | | || || || ||||| || || || || || Sbjct 38745 AGCATATGACTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTT 38804 Query 179738 CTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCA 179797 |||||| || || ||| |||| || |||||| | | | |||||||| || || || Sbjct 38805 CTATACTAAAAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCA 38864 Query 179798 ACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCTGTGATA 179857 |||||||||||| |||||||| || || || || || ||| | || ||||| || | ||| Sbjct 38865 ACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATA 38924 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18367 TAGGGTAGGTGTCCGAGTGGTTAATGGAGGCGGACTGTAAATCCGCTGGCTCTGCCTACG 18426 |||||| | || |||||||||||| || |||||||||||||||||||||||| ||||||| Sbjct 56077 TAGGGTCGATGCCCGAGTGGTTAAAGGGGGCGGACTGTAAATCCGCTGGCTCAGCCTACG 56018 Query 18427 GGGGTTCAAATCC 18439 ||||||||||| Sbjct 56017 TTGGTTCAAATCC 56005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596302101573440