Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq684 641 5e-179 >seq684 Length=114989 Score = 641 bits (710), Expect = 5e-179 Identities = 722/961 (75%), Gaps = 8/961 (1%) Strand=Plus/Plus Query 169372 CACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTGATGATCCCCTGCCTGCTGGC 169431 ||| || |||||| | || ||||||||||||| || | |||||||| | | | Sbjct 68483 CACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAAC 68542 Query 169432 AGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCCCCTGTGGACATCGACGGCAT 169491 ||| || | || ||||||||||| ||||||| || || || || || ||||| || || Sbjct 68543 AGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTAT 68602 Query 169492 CCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 169551 ||| ||||| || ||||| || || | || || |||||||| ||| | ||||| ||| | Sbjct 68603 CCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTAT 68662 Query 169552 GCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGA 169611 || ||| ||||| || ||| |||||||||| || | |||||||| || | | || Sbjct 68663 TCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGA 68722 Query 169612 TGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTCATCGGCAT 169671 |||||| | |||||||||||||||| |||||| || || || |||||| | | || | Sbjct 68723 CGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGT 68782 Query 169672 --CTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGG 169729 || |||| ||||||| ||||| |||||| | ||| ||| | || ||||| |||||| Sbjct 68783 AGCT-TGCT-ACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGG 68840 Query 169730 ATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCG 169789 || | || |||| ||| ||||| || || ||||| || || ||| | | ||||| Sbjct 68841 ATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCA 68900 Query 169790 TTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTAC 169849 | || ||||| |||||||| | ||||||| | |||||||| || || || |||| | Sbjct 68901 ATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTC 68960 Query 169850 ATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTT 169909 ||| | || |||||||| || |||||||| || |||||||| ||||| ||| ||||||| Sbjct 68961 ATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTT 69020 Query 169910 GCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGT 169969 || || ||||||||||| ||| | || || || ||||||||| || || || || ||| Sbjct 69021 GCTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTCTTGTAACATCTAGT 69080 Query 169970 CTTGTCCGTGAAACCACCGAGAACGAGTCCCAG--AACTATGGTTACAAGTTCGGTCAAG 170027 | |||||||||| ||| | || | | ||||| |||||||| || || |||| Sbjct 69081 TTAATCCGTGAAACTGA--AGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAG 69138 Query 170028 AAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTCCAAT 170087 ||||||| || ||||||||||| || || ||||||||||| || || | |||||||||| Sbjct 69139 AAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAAT 69198 Query 170088 ACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTTGTTG 170147 |||| ||||||||||| ||| | | ||||||||| | || || ||||| ||||| | Sbjct 69199 ACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAG 69258 Query 170148 GCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAACGGTTTCAACT 170207 | |||||||| || |||||||| | ||| ||||| |||||| | ||||| ||||||| Sbjct 69259 GTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACT 69318 Query 170208 TCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCA 170267 ||||||| || | | ||| | || ||||||||| ||||||| ||||| ||| || ||| Sbjct 69319 TCAACCAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCA 69378 Query 170268 ACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCG 170327 ||||||||| | | || |||||||| |||||||| ||||| || |||||||||||||| | Sbjct 69379 ACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAG 69438 Query 170328 A 170328 | Sbjct 69439 A 69439 Score = 576 bits (638), Expect = 2e-159 Identities = 740/1010 (73%), Gaps = 8/1010 (1%) Strand=Plus/Plus Query 170607 GATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTTTT 170666 ||||||||| | ||||| ||||| || |||||| | || ||||| || ||| | | ||| Sbjct 37918 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 37977 Query 170667 CCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTTGG 170726 || || || | ||||||| |||| || ||| | || || || || ||||||||| |||| Sbjct 37978 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 38037 Query 170727 TACACCCACGGACTTGCAAGTTCGTACCTTGAAGG-TGCTAATTTCCTTACAGCGGCTGT 170785 ||||| || ||| | || ||| ||| | || || ||| || ||| | || | ||||| Sbjct 38038 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTTAACTGTAGCTGT 38096 Query 170786 GTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 170845 ||||| ||||| || |||||||||||| | | || | ||||| || ||| | || Sbjct 38097 ATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACA 38156 Query 170846 GGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGG 170905 || ||||| || ||| | ||| | || ||| | |||| |||||| || | || || Sbjct 38157 AGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGG 38216 Query 170906 AGCCTTTGCTCTCATAGGTTTCATGCTT-CGGCAGTTTGAAATCAGTCGTCTCGTAGGGA 170964 || |||| | || || ||| || || || || |||||||| |||||| ||||| | Sbjct 38217 GGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTA 38275 Query 170965 TTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCC 171024 || | ||||| |||||||| || || || || |||||||| || || || || ||| Sbjct 38276 TTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCT 38335 Query 171025 TCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAA 171084 | ||||||||| | || || ||||||||||||| || ||| |||||||||||||| | Sbjct 38336 TAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTA 38395 Query 171085 TCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATA 171144 | ||||| ||||| | ||| | ||||||||||| ||||||||||| |||||||| || | Sbjct 38396 TTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACA 38455 Query 171145 TGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAG 171204 |||||||||| ||||| || | || |||||| | | |||||||||||||| | ||| | Sbjct 38456 TGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTG 38515 Query 171205 TAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACA-CG 171263 |||| || || || | |||||||||||| || || || || || ||| ||| | Sbjct 38516 TAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGC-TTTCACACCA 38574 Query 171264 ACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTT 171323 || || ||||| || ||||| ||||| || || || | |||||||| || |||||| Sbjct 38575 ACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTTT 38634 Query 171324 GGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATG 171383 ||| | || || || || |||||| | |||||||| ||| | |||||||| || | Sbjct 38635 GGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACA 38694 Query 171384 GGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTT-AGGGCTTATGA 171442 ||| | ||| ||| | | || || | ||| | || |||| ||| || || ||||| Sbjct 38695 GGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGC-ATTAAACTTAAGAGCATATGA 38753 Query 171443 TTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAA 171502 || ||| ||| ||| | | ||||| ||||||||||| || || || |||||||| || Sbjct 38754 CTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAA 38813 Query 171503 GAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGA 171562 || ||| |||| || |||||| || | |||||||||| || |||||||||||||| Sbjct 38814 AAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGA 38873 Query 171563 AAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 ||| ||||| ||||||||||| ||| |||| ||||| || || |||| || Sbjct 38874 AAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAAT 38923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592193336703680