Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq4 140 7e-28 seq3 125 1e-23 seq6 95.1 3e-14 seq9 91.5 3e-13 >seq4 Length=1364975 Score = 140 bits (154), Expect = 7e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||||| || || |||| ||||| || ||||| || ||||||||||||| Sbjct 829194 ACCGCCACGCAATCGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGA 829253 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | |||||| || ||||| || || ||||| ||||| || | || || || ||| || Sbjct 829254 CAACGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGG 829313 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||||||||||||| || ||||| ||| || || | ||||| ||||| | || | Sbjct 829314 GATACCCTCCTTGTCCTGAATCTTCTGC-TTCACATTCTCGATCGTGTCACTGGGCTCCA 829372 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| ||||| ||||||| |||||||| || || ||||| Sbjct 829373 CGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTAACAAAGATTTGCAT 829421 >seq3 Length=1384164 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||| ||| | |||| || || || ||||| || ||||||||||||| Sbjct 138238 CCACCACGCAAGCGCAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 138179 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || || || || || || || || || || | || || || || ||| Sbjct 138178 AGCGTGCGTCCGTCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGA 138119 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||| |||||| || || | ||||| || || | ||||| Sbjct 138118 ATGCCCTCCTTGTCTTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACA 138059 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 138058 TCCAATGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 138012 >seq6 Length=1241202 Score = 95.1 bits (104), Expect = 3e-14 Identities = 185/271 (68%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 299575 TACCCCATCAAAGAAGCGCAGACA-TCGAACATGCTGCGCCGCCCCATCGGCGTGGGGGT 299633 ||||| || | ||||| ||| | |||||||||| | |||||||||||| | || || Sbjct 394520 TACCCTGTCGAGGAAGC-CAGGCGCTCGAACATGCGACACCGCCCCATCGGGATCGGCGT 394578 Query 299634 ACAAGGACTTCAGGATGTGTTCTTCAAACTGAAGCTCCCATTTGACTCTCCGGAGGCCAG 299693 || || | ||| | ||| |||| || ||||||| || |||||||||||| Sbjct 394579 GCAGGGTTTGGCGGACGCCTTCATCAAGATGCGATTCCCATTCGAGTCTCCGGAGGCCCA 394638 Query 299694 GGATCTTAACCGGGAAATCTTCGAGCATATCTACTACGCTGCCGTTGAAGCGTCGGTAGA 299753 | | |||||| ||| || |||||| || |||| || || || || |||||| | || Sbjct 394639 GCAGCTTAACAAGGACATTTTCGAGACCATGTACTTCGGGGCGGTAGAGGCGTCGATGGA 394698 Query 299754 ACTCGCGGAAATCCACGGGCCTCACCCCACCTTCGAAGGGTCTCCTGCAAGTAAGGGCAT 299813 ||||| | | || || || ||||||| || || || || |||||| | Sbjct 394699 GATCGCGATGAAGGAGGGTCCCTACGAGACCTTCGCCGGCTCCCCCATGAGCAAGGGCGT 394758 Query 299814 CCTCCAATACCACTTGTGGGATGTTACCCCC 299844 | |||||| | || |||||| || |||||| Sbjct 394759 CTTCCAATTCGACATGTGGGGCGTGACCCCC 394789 >seq9 Length=1164708 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 |||||||| || || || |||||||| || | || || || ||| || || |||||| Sbjct 608018 CCATCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGGATCCCCTCC 608077 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 ||||| ||||||||| || || | || || ||||| | || || || | ||| Sbjct 608078 TTGTCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACGTCCAAAGTA 608137 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||||| ||||||||||| || ||||| Sbjct 608138 ATGGTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCAT 608175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046730026639336