Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq4 122 6e-23 seq9 114 9e-21 seq3 111 1e-19 >seq4 Length=1364975 Score = 122 bits (134), Expect = 6e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||| || || |||||||| || | | |||| |||| |||||||||||||| ||||| Sbjct 829230 CTCTTTCTGAATGTTGTAGTCAGACAACGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAA 829289 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 || | ||||||||||| | || | ||| ||||| ||| ||||||||||||| | Sbjct 829290 AATGAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTCTGCTTCACATT 829349 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||| || ||||| || | ||| || ||||| ||||| || ||||| || Sbjct 829350 CTCGATCGTGTCACTGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTAAC 829409 Query 44326 GAAGATTTGCAT 44337 ||||||||||| Sbjct 829410 AAAGATTTGCAT 829421 >seq9 Length=1164708 Score = 114 bits (126), Expect = 9e-21 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || || |||||||| |||||||| || | ||||||||||| | || | || ||||| Sbjct 608021 TCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGGATCCCCTCCTTG 608080 Query 44243 TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 ||| ||||| ||||||| | | ||||||||| || ||||| |||| ||||| Sbjct 608081 TCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACGTCCAAAGTAATG 608140 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| ||||| |||||||| ||||| ||||||||| Sbjct 608141 GTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCATG 608176 >seq3 Length=1384164 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 ||| |||| ||| | || ||| || || |||||||| || | || ||| |||| Sbjct 138224 CAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGCGTGCGTCCGTC 138165 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 ||||||||||| || || || || | ||||||||||| | || | || ||||| || Sbjct 138164 TTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTGTC 138105 Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 ||||| ||||||| || | ||||| ||| || || || |||| || || || Sbjct 138104 TTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACATCCAATGTGATGGT 138045 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| ||||| |||||||| |||||||| |||||| Sbjct 138044 CTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 138011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359987399030028