Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq9 118 3e-21 seq3 113 1e-19 seq4 109 1e-18 >seq9 Length=1164708 Score = 118 bits (130), Expect = 3e-21 Identities = 127/166 (77%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 ||||||||||| || || || || || || || || || | || |||| ||| || | Sbjct 608172 CAAATTTTCGTTAAGACCCTGACGGGCAAGACCATTACTTTGGACGTGG--AGCCCAGCG 608115 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || |||||||| |||||||| || || ||||| || || |||| Sbjct 608114 ACACCATTGAGAATGTGAAGCAAAAGATCCAGGACAAGGAGGGGATCCCCCCTGATCAGC 608055 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 | || || || || ||||| || |||||||| ||||| ||||| || Sbjct 608054 AGCGCCTCATTTTTGCCGGCAAGCAGCTCGAGGATGGGAGGACACT 608009 >seq3 Length=1384164 Score = 113 bits (124), Expect = 1e-19 Identities = 151/207 (73%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || || || || || ||||| | || || || || ||| Sbjct 138015 CAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACATTGGATGTCGA--GCCCAGCG 138072 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | |||||||| || || || ||||||||||| ||||| || || || || || || |||| Sbjct 138073 ATACCATCGAAAATGTGAAGCAAAAGATTCAAGACAAGGAGGGCATTCCCCCCGATCAGC 138132 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || || ||||| ||||| ||||| ||||| ||| | || || | || || ||| Sbjct 138133 AGCGCCTAATTTTCGCAGGAAAGCAGCTGGAAGACGGACGCACGCTGTCTGACTACAACA 138192 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | || ||||| ||||| |||| |||| Sbjct 138193 TTCAGAAAGAGTCAACCTTGCA-CTTG 138218 >seq4 Length=1364975 Score = 109 bits (120), Expect = 1e-18 Identities = 147/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || || || || || || || || || ||||| ||||| ||||| || ||| Sbjct 829418 CAAATCTTTGTTAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGA--GCCCAGTG 829361 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| |||||||| || || || |||||||||||||| || || ||||| || || |||| Sbjct 829360 ACACGATCGAGAATGTGAAGCAGAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCAGC 829301 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || || || || || || ||||| || || || | || | | || || ||| Sbjct 829300 AGCGCCTCATTTTTGCGGGGAAGCAGCTGGAGGACGGGCGCACGTTGTCTGACTACAACA 829241 Query 178102 TCCAAAAAGAATCAACACTGCAT 178124 | || ||||| || || || ||| Sbjct 829240 TTCAGAAAGAGTCTACCCTACAT 829218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203720650800696