Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3 132 4e-26 seq4 125 7e-24 seq9 120 3e-22 >seq3 Length=1384164 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 41648 CGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCG 41707 || || |||| |||| || ||| ||||||||||| ||||| || || ||||| || Sbjct 138226 CGCAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGCGTGCGTCCG 138167 Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767 || || |||||||| || ||||| || |||||||| || || | ||||| || ||||||| Sbjct 138166 TCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTG 138107 Query 41768 TCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATC 41827 || || |||||||||| | || ||||| | ||| || |||| || || Sbjct 138106 TCTTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACATCCAATGTGATG 138047 Query 41828 GTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || |||||||| ||||| ||||| ||||||||| Sbjct 138046 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 138011 >seq4 Length=1364975 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || | || | |||| ||| || || ||| ||||||||||| ||||| || Sbjct 829195 CCGCCACGCAATCGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGAC 829254 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| |||| || |||||||| || || || || |||||||| || || | ||| Sbjct 829255 AACGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGGG 829314 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| || || ||||||| | | ||||| || | |||||| Sbjct 829315 ATACCCTCCTTGTCCTGAATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCACG 829374 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| || || || |||||||||||||| || || || ||||| Sbjct 829375 TCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTAACAAAGATTTGCAT 829421 >seq9 Length=1164708 Score = 120 bits (132), Expect = 3e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || | | | || ||||||||||||||||| || || |||||||| || || | ||| Sbjct 608008 GAGTGTCCTCCCATCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGG 608067 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| |||||||||| | | |||||||| | |||||| Sbjct 608068 GATCCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCAC 608127 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || || || |||||||| ||||| |||||||| |||||| Sbjct 608128 GTCCAAAGTAATGGTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCATG 608176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462300047300800