Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq5823 131 1e-25 >seq5823 Length=45548 Score = 131 bits (144), Expect = 1e-25 Identities = 285/425 (67%), Gaps = 4/425 (1%) Strand=Plus/Minus Query 18788 GGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGA 18847 |||||| | |||||| | ||||||||||| ||| | ||||| || ||||| ||| || Sbjct 6053 GGGGGATTTGGGCCCCGTCTACGGCTTCCAATGGCGGCATTTCGGGGCGGAGTATTCGGA 5994 Query 18848 CTGTCAATCAAACTATTTACAGC--AAGGAATCGATCAGCTGCAAACTGTTATAGATACA 18905 | || || |||| || | |||| ||||| ||| || | ||| || Sbjct 5993 CATGCACACAGACTAC--ACTGGCAAAGGCATCGACCAGTTGGCTCGGGCAATAACCACC 5936 Query 18906 ATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATC 18965 || || |||||||| || || || ||| ||||| | ||||| || |||| | Sbjct 5935 ATCAAGGACAACCCAGAGGATCGCCGCATCATTGTATCGGCCTGGAACCCCGCGGATTTG 5876 Query 18966 CCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAA 19025 |||| || || || ||||||| ||| || || || ||||| ||| |||| || Sbjct 5875 GGAAAGATGGCCCTGCCGCCGTGTCACATGTTTTGCCAATTCTACGTCGCAGACGGAGAG 5816 Query 19026 TTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATT 19085 | || || || | || ||| | || | || ||||| | || || |||||||| ||| Sbjct 5815 CTCTCTTGTCAGATGTATCAGCGTTCCGCAGACATGGGGTTGGGTGTGCCGTTCAATATT 5756 Query 19086 GCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGAT 19145 || || ||||| | || | | ||||| || || || | ||| ||||||| Sbjct 5755 GCCTCTTACGCACTCTTGACACGCTTGGTAGCTCAAGTCTGTGGCTTGAAAGCCGGAGAG 5696 Query 19146 TTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTG 19205 || ||||| || || |||||||||||| | ||| |||||||| |||| || | |||| | Sbjct 5695 TTCATTCACACGATTGGGGATGCACATGTGTACCTGAATCATGTAGACGCGCTGAAAGAG 5636 Query 19206 CAGCT 19210 ||||| Sbjct 5635 CAGCT 5631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399470598968700