Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq5823 174 2e-38 >seq5823 Length=45548 Score = 174 bits (192), Expect = 2e-38 Identities = 499/763 (65%), Gaps = 21/763 (3%) Strand=Plus/Plus Query 145635 GATCCTGAGCCTGGGAAAGGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCAC 145694 ||||| ||| | || || | || ||| ||| ||| ||||| ||||| | || || Sbjct 5594 GATCCGCAGCTTCGGGAAAGATCGAGGGGTCCGGGTGAGCTGCTCTTTCAGCGCGTCTAC 5653 Query 145695 GTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCC 145754 || || ||||| || || || ||||| | ||| ||||| || |||| | | ||| Sbjct 5654 ATGATTCAGGTACACATGTGCATCCCCAATCGTGTGAATGAACTCTCCGGCTTTCAAGCC 5713 Query 145755 CGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCC 145814 || || || |||| | |||| || | ||| ||| || ||||| ||||| || Sbjct 5714 ACAGACTTGAGCTACCAAGCGTGTCAAGAGTGCGTAAGAGGCAATATTGAACGGCACACC 5773 Query 145815 CAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTA 145874 || ||||||||| | || ||||| |||| ||| || |||||||| ||| | || ||||| Sbjct 5774 CAACCCCATGTCTGCGGAACGCTGATACATCTGACAAGAGAGCTCTCCGTCTGCGACGTA 5833 Query 145875 GAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCA 145934 ||| ||||| | | ||| || |||||||||||||| || ||||| |||||||| Sbjct 5834 GAATTGGCAAAACATGTGACACGGCGGCAGGGCCATCTTTCCCAAATCCGCGGGGTTCCA 5893 Query 145935 GGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCT 145994 ||| | | | || | | ||| ||||| |||||| ||| | || Sbjct 5894 GGCCGATACAATGATGCGGCGATCCTCTGGGTTGTCCTTGATGGTGGTTAT----TGCCC 5949 Query 145995 GAG----CTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCC 146050 ||| |||||| | ||| | || ||| ||||| | |||| ||| | |||| Sbjct 5950 GAGCCAACTGGTCGATGCCTTTGCCAGTGTAGTCTGTGTGCATGTCCGAATACTCCGCCC 6009 Query 146051 CGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCA 146110 |||| |||| ||| ||||| ||||||||||| |||| ||||| |||| ||| | Sbjct 6010 CGAAATGCCGCCATTGGAAGCCGTAGACGGGGCCCAAATCCCCCTCTTCCCGGTG----A 6065 Query 146111 GCCCGGCCC----GGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCC 146166 | ||||| | | || | |||||||| ||| |||||||||| | Sbjct 6066 GAAAGGCCCAATTTGTCCAGATATTCCCGGGAGGAGTTCCCGTCCCAGATTCCAATTTTT 6125 Query 146167 CTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGG 146226 || | | | ||| | || || || || ||||||||| | || |||||| Sbjct 6126 TTCTCCTTCAAATAATTCGCATCGGTCGATCCGGAGATGAACCACAAGAGTTCTTCGGCC 6185 Query 146227 ACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAA---CTGGCCCCGCAGGGAG 146283 ||||| | ||| ||||||| ||||||||| |||| || || || | |||||||| Sbjct 6186 ACCCCGCGCCAAAAGACCCGCTTGGTGGTGAGCAACGGAAAGGTCTCATCACGCAGGGAA 6245 Query 146284 TACTTGGCCTGGTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCCTGTCCCCCCTGCGC 146343 || |||| | || || || |||||||| ||||| |||||||| ||| Sbjct 6246 AACCGAAGCTGGGCGCCAAATTTTGAGAGGGTGCCTGTCTGCGTCCGGTCCCCCCGCCGC 6305 Query 146344 ACCCCGTTCGCCAGGATCTCCCTGACGGTGTTG-AGGTACTGG 146385 ||||| | | | ||||| |||| | || | ||||||||| Sbjct 6306 TTCCCGTGCTCGATGATCT-CCTGCACGAGTCGCAGGTACTGG 6347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590026200914400