Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq802 138 1e-27 seq259 134 1e-26 seq4979 98.7 1e-15 >seq802 Length=4370 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| |||||||| | || ||||| ||| | Sbjct 486 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACATTGGATGTCGAGCCCAGC 427 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| | ||| |||| |||| ||||| |||||||| ||| | || ||| Sbjct 426 GATACCATCGAAAATGTGAAGCAAAAGATTCAAGACAAGGAGGGCATTCCCCCCGATCAG 367 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| || || |||||||| |||| ||||| || ||||||||| Sbjct 366 CAGCGCCTAATTTTCGCAGGAAAGCAGCTGGAAGACGGACGCACGCTGTCTGACTACAAC 307 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 || ||||| ||| | || |||| | || ||||||||| | || || ||| Sbjct 306 ATTCAGAAAGAGTCAACCTTGCACTTGGTCTTGCGCTTGCGTGGTGGGGGC 256 >seq259 Length=12200 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || ||||| |||||||| |||||||| ||||||| || ||| Sbjct 5576 ATGCAAATCTTTGTTAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCCAGT 5635 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| | || |||| ||||| ||||| |||||| | || ||| Sbjct 5636 GACACGATCGAGAATGTGAAGCAGAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCAG 5695 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||| | ||||| || |||||||| |||| |||||| | ||||||||| Sbjct 5696 CAGCGCCTCATTTTTGCGGGGAAGCAGCTGGAGGACGGGCGCACGTTGTCTGACTACAAC 5755 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||| ||| | || || ||| | || |||| ||| | ||||| Sbjct 5756 ATTCAGAAAGAGTCTACCCTACATTTGGTCCTGCGATTGCGTGGCGG 5802 >seq4979 Length=17524 Score = 98.7 bits (108), Expect = 1e-15 Identities = 200/296 (68%), Gaps = 12/296 (4%) Strand=Plus/Minus Query 116837 GAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTAT 116896 ||||| || ||||||||||| || || |||||||| || || | ||| || ||||| Sbjct 10238 GAGGCTCGATGCTTCTACGGTTTCCAAATCGCCATCGAAAATATTCACAGTGAGGTGTAT 10179 Query 116897 TCGACCCTCATCGACACGTACGT---GCGCTCTTCGGAG---GAGAAGCTCCGTTTGTTG 116950 || ||| || ||||| ||| | | | | || ||| | |||||| || Sbjct 10178 TCCCTCCTTATTGACACTTACATCAAGAACCCATCCGAGAAACACAAGCTC------TTA 10125 Query 116951 AACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATC 117010 |||||||| ||||| | || || ||| | ||||| |||||||| || ||| | Sbjct 10124 AACGCCATTGAGACCGTCCCTTGTGTCCGACGCAAGGCGCGTTGGGCGCTCCGGTGGTGC 10065 Query 117011 GCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTC 117070 | | ||| | || | || | ||||||| || | ||||| || ||||| |||||| || Sbjct 10064 GACCGCAAGTACGCGTCTTTTGCCGAGCGCTTGATCGCCTTTGCAGCCGTGGAGGGCATC 10005 Query 117071 TTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 || || || ||| ||| | | || || ||| | ||||| || ||||| ||||| Sbjct 10004 TTTTTCTCCGGCTCCTTCTGCTCGATTTTCTGGTTGAAGAAGCGGGGCCTGATGCC 9949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515175019953600