Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq5823 113 4e-20 >seq5823 Length=45548 Score = 113 bits (124), Expect = 4e-20 Identities = 274/415 (66%), Gaps = 0/415 (0%) Strand=Plus/Minus Query 20207 ACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTG 20266 |||| |||||||||||||||| || || || || || |||||| | ||||| || || | Sbjct 6063 ACCGGGAAGAGGGGGATTTGGGCCCCGTCTACGGCTTCCAATGGCGGCATTTCGGGGCGG 6004 Query 20267 AATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTA 20326 | ||| |||||| ||||| | || ||| |||| | || || || | | Sbjct 6003 AGTATTCGGACATGCACACAGACTACACTGGCAAAGGCATCGACCAGTTGGCTCGGGCAA 5944 Query 20327 TTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTA 20386 | | || || |||||| | || | | || ||| ||| ||||||||| | Sbjct 5943 TAACCACCATCAAGGACAACCCAGAGGATCGCCGCATCATTGTATCGGCCTGGAACCCCG 5884 Query 20387 AAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTA 20446 ||| || ||||| |||| || ||||| ||| | |||||||| ||||| || Sbjct 5883 CGGATTTGGGAAAGATGGCCCTGCCGCCGTGTCACATGTTTTGCCAATTCTACGTCGCAG 5824 Query 20447 ATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTT 20506 | || | || ||||| |||||||| || ||||| || ||||| ||||||| || | Sbjct 5823 ACGGAGAGCTCTCTTGTCAGATGTATCAGCGTTCCGCAGACATGGGGTTGGGTGTGCCGT 5764 Query 20507 TCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAA 20566 |||||||||| ||| || || | || || | || || || | || ||| Sbjct 5763 TCAATATTGCCTCTTACGCACTCTTGACACGCTTGGTAGCTCAAGTCTGTGGCTTGAAAG 5704 Query 20567 CGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGA 20621 | || || || | ||||| || || || || ||| | ||||| |||||| |||| Sbjct 5703 CCGGAGAGTTCATTCACACGATTGGGGATGCACATGTGTACCTGAATCATGTAGA 5649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399150625722700