Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2149 167 5e-36 seq1319 86.0 1e-11 >seq2149 Length=43014 Score = 167 bits (184), Expect = 5e-36 Identities = 808/1279 (63%), Gaps = 51/1279 (4%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || || | ||||| || ||||||||||| || ||||| || || || || Sbjct 33252 GACTTTGATTATGACTACTTTGGCTTTAAAACGCTGGAAAAGTCGTACCTTCTTAAGATG 33311 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || | |||| || ||||||||| | ||||| ||||| | || || ||| Sbjct 33312 AACGGGGTAGTTATGGAGCGCCCCCAGCACATGATCATGCGTGTGGCAATTGGTATCCAC 33371 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGA----- 248983 || || |||| || | ||| ||||| |||| ||| |||| | Sbjct 33372 AAAGAGAACATTGACGCGGCGCTGGAGACCTACAATCTCATGT-----CGCTCAAACTTT 33426 Query 248984 TGACACATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGC 249039 | || ||||| || || || || ||||| ||||| || || | ||| || | Sbjct 33427 TCACGCATGCTACGCCTACACTTTTCAATGCCGGCACACCGCGGCCCCAA----CTCTCC 33482 Query 249040 TCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAA 249099 || ||||| || || ||||| | || ||||| |||||||||| || ||||| || || Sbjct 33483 TCCTGCTTCCTCCTGACCATGAAGGAGGACTCCATCGACGGCATCTACGACACCCTCAAG 33542 Query 249100 CAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGA 249159 || || ||||| ||||| ||||| || || || | ||| || |||||| || Sbjct 33543 CAATGCGCTGCCATTTCCAAATTTGCGGGTGGGATTGGCGTATCCATCCACAACATTCGG 33602 Query 249160 GCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTT 249219 ||| | || ||||| || | || || | | || |||||||| | || Sbjct 33603 GCGCGAGACTCCTACATTCGTGGATCGAACGGCACCTCCAACGGCATCGTACCTATGCTC 33662 Query 249220 CGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCG 249276 || || | || ||| | | | || |||||| ||| || || ||||| || Sbjct 33663 CGCGTTTTCAACGATACGGCCCGCTACGTCGACCAGGGCGGAGGCAAGCGCAAGGGTTCC 33722 Query 249277 TTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAG 249336 |||||||| || | || ||||| || || || || || ||||||||| || ||| Sbjct 33723 TTCGCCATCTACCTAGAGCCCTGGCATGCAGACATCTTTGAATTCCTGGACCTGCGTAAG 33782 Query 249337 AACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGAC 249396 ||| ||||||||||| | | | || ||||| || ||||||| ||| ||| ||||| Sbjct 33783 AACCACGGCAACGAGTTGGAGCGTGCACGTGATCTGTTCTACGCCCTCTGGACGCCCGAC 33842 Query 249397 TTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCC 249456 |||||||||| ||||| || |||||| || ||| | ||| ||| || ||| | Sbjct 33843 CTGTTCATGCGGCGCGTGGAGAGCGACGGGGACTGGTCCCTTTTTTGCCCCAACGAGTGC 33902 Query 249457 CCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATAAGAAATACGAATCC 249516 |||| ||| || | ||||| || || |||| ||| | ||||| Sbjct 33903 CCGGGCCTGGCGGACGTGTGCGGCGAGGAGTTTAACCAGCTCTACGCCAGCTACGAGAAG 33962 Query 249517 AACGGCATCG---GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAG 249570 | || | | ||||| || ||||| | | || || |||| | |||| Sbjct 33963 AGTGGGAAAGCACGCAAGGTTATTAAGGCCCAGCAGCTCTGGTTCGCGA---TTCTGGAC 34019 Query 249571 TCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAGAGT 249630 |||||| | |||||||| ||| || ||||||| ||||| |||||| || Sbjct 34020 TCCCAGGTGGAGACAGGCACGCCTTACATGCTGTTCAAGGACGCCTGCAACCTGAAATCA 34079 Query 249631 AACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATAC 249690 ||||| | | | | || |||||| || || ||||| || | ||| | || | ||| Sbjct 34080 AACCAGCAGAACTTGGGCACCATCAAATCATCCAATCTGTGCACGGAGATCATCGAGTAC 34139 Query 249691 TCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC-------AA-------GCATCAATC 249736 |||| || ||| | || |||||||||||||| || |||| ||| Sbjct 34140 ACGTCGCCCGATGAGGTCGCGGTCTGCAACCTGGCCTCCGTGAACCTTTCCGCATTCATC 34199 Query 249737 --TCGTGAGG---CACGT-GAGGGCGGAC-AGGACGTTCGACTTCGAGCGTCTTCACCGG 249789 | |||| | || | ||| ||| || | |||| | |||| || | Sbjct 34200 CAAGGGGAGGGCTCCGGTAGCGGGAAGACGCCCACTTACGACCTGCAGCGGCTGTATGAA 34259 Query 249790 ACGGCGAAACAGGCGATCAAAAACCTCAACAAGGTGATTGATGTCAATTTTTACCCCCTT 249849 | |||| || || |||||| ||| || || || |||| | ||||| | Sbjct 34260 ATCACGAAGGTGGTGACACGAAACCTGAACCGCGTCATCGACATCAACTACTACCCTGTC 34319 Query 249850 GAGGAATGCAGGTTGTCCAACATGAAGCACCGTCCATGTGGGCTGGGCGTTCAGGCACTG 249909 |||||| |||| || |||||| ||||| || ||| | ||||| |||| || Sbjct 34320 GAGGAAGCCAGGCGCTCGAACATGCGACACCGCCCCATCGGGATCGGCGTGCAGGGTTTG 34379 Query 249910 CACGACGTCTACATGGTGATGGGATTCCCCTTCGAGTCAGAGGAGGCAGCGACGCTAAAT 249969 |||| || ||| |||| ||||||| |||||||| |||||| | ||| || Sbjct 34380 GCGGACGCCTTCATCAAGATGCGATTCCCATTCGAGTCTCCGGAGGCCCAGCAGCTTAAC 34439 Query 249970 AAACAGATTTTCGAGACCATCTATCACGGGAGCGTCGAGGCGTCCATCGAAAGGGCCAAG 250029 || | |||||||||||||| || |||| || |||||||| || || | || | | Sbjct 34440 AAGGACATTTTCGAGACCATGTACTTCGGGGCGGTAGAGGCGTCGATGGAGATCGCGATG 34499 Query 250030 ATCGACGGACCATACGAGA 250048 | || || || ||||||| Sbjct 34500 AAGGAGGGTCCCTACGAGA 34518 >seq1319 Length=24917 Score = 86.0 bits (94), Expect = 1e-11 Identities = 178/263 (68%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 248430 CAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGCGCGCATCAAGAA 248489 ||||||||||||||| | ||| || ||||||||| ||| || |||| | | Sbjct 10345 CAAGCGGGACGGGCGAAGAGAGCCGGTGGCCTTCGACAAGATCACGAAGCGCCTGCGCAG 10286 Query 248490 GCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCAT--CGCCCAGAAAGTT 248547 || || | |||||| | | ||| ||| |||| | ||| | ||||||||| ||| Sbjct 10285 CCTTTGCAAGGGTCTGAATACAGACTACGTGGATCCAG--GCCGTGTCGCCCAGAAGGTT 10228 Query 248548 ATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAGCTGCGGAGACG 248607 || ||| | || | ||| || | ||| | || || |||| |||| ||||||||| Sbjct 10227 GTTCAAGGCATGTATAACGGCGTTTCCACGGCCGAGCTTGACAATCTAGCGGCGGAGACG 10168 Query 248608 GCGGCGTACATGGCGATTGCACACCCCGACTACTCGCTGCTGGCCGGGAGGATCGCCGTC 248667 ||||| ||| || || | || ||||||||| ||| ||| || | | | ||||| Sbjct 10167 GCGGCCTACTTGAATATCGATCATCCCGACTACGCGCGGCTCGCAGCCCGTGTGTCCGTC 10108 Query 248668 TCAAGGCTTCACAAAGAAACGAA 248690 || | || |||||||| || || Sbjct 10107 TCCAACCTGCACAAAGAGACCAA 10085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073672022644480