Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2149 329 3e-85 seq1319 257 1e-63 >seq2149 Length=43014 Score = 329 bits (364), Expect = 3e-85 Identities = 1242/1928 (64%), Gaps = 76/1928 (4%) Strand=Plus/Minus Query 22104 TCTTGTCCACTGTAAACTGTATGGCGTTTGC----GGCCGGTTTGGTGCGAAGATAATAC 22159 |||| ||||| || ||||||||||| | || |||||| || || || || ||| Sbjct 35118 TCTTATCCACCGTGAACTGTATGGCATCCGCCTTGGGCCGG----GTCCGTAGGTAGTAC 35063 Query 22160 ATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAA 22219 ||||| ||||| || ||| ||||||| | || || || || || || | | | || Sbjct 35062 ATGCCGGTCTTGAGCCCCTTCTTCCAGGAATAGAAGTGCATGGAGGTGAGCTGTGCAGGC 35003 Query 22220 CTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCG 22279 |||| | ||| | | ||||| ||||| |||| ||| | || || || ||| Sbjct 35002 GTCGGATTGGCCAAATGGATATTGAGAGACTGCGACTGACAGATGTAGGCGCCGCGGTCG 34943 Query 22280 GCGGCCATATTTATCAATGTACGCA--TCGAC---ATTTCCCATACGGTCTTGTACAGTT 22334 |||||| | |||| |||| || | || ||||| || ||||||||||| | Sbjct 34942 GCGGCCTGGTCGATCA-----CGCACTTCTGCCGGATCTCCCACACTGTCTTGTACAGGT 34888 Query 22335 GCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCA 22394 | ||| ||| || || | | ||||||| || || | ||| || || Sbjct 34887 CCTTGAGCTCCCGAGGGATGCTGGCCACATTCTGGACTGAGCCCCTGTTGCCCATAATTT 34828 Query 22395 AATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGT 22454 |||| | | |||||| || | || | | || || ||| | || Sbjct 34827 GATTTCGGACTTCAGAAGTCCACAGGCCTTGGTCGATGAGGTCGCGGAGCAGGTACTTGT 34768 Query 22455 TCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTT 22514 ||||||| || ||||| | ||| ||||| || ||| ||||| |||||||| || | Sbjct 34767 TCACCACCGTGAATTCGCCCGCCAACACGCGACGGGAGTACATGTTCGATGTGAAAGGCT 34708 Query 22515 CGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACA 22574 | | ||| || ||||| ||||| ||||| || || || ||||| ||||| || || | || Sbjct 34707 CAACAGACTCGTTGTTGCCCAGGATCTGCGCAGTAGATGCGGTAGGCATGGGTGCGAGCA 34648 Query 22575 GTAGCGAGTTTCTCAAGCCGTGCTT-TGAAATTTTACTCTTGAGCATCGACCAGTCCCAC 22633 ||| ||||| | | ||||||| || | ||| | | | | | | ||||||||| Sbjct 34647 ATAGTGAGTTGCGGACACCGTGCTCCTGCACTTTGAAGCGTAAACCG-GCCCAGTCCCAG 34589 Query 22634 AGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGG 22693 || || || ||||| | ||||||| ||| |||| || ||||| ||| ||| Sbjct 34588 CGAGTTGAGGGGGTCAC---GCCCCACATGTCGAATTGGAAGACGCCCTTGCTCATGGGG 34532 Query 22694 CTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGCCTCCAA 22752 ||| || | || ||||| ||||| | || || | || || | |||||| | Sbjct 34531 GAGCCGGCGAAGGTCTCGTAGGGACCCTCCTTCATCGCGATCTC-CATCGACGCCTCTAC 34473 Query 22753 CGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACGC 22808 ||| ||| | || || |||||||| || | |||||| | | ||| || ||| Sbjct 34472 CGCCCCGAAGTACATGGTCTCGAAAATGTCCTTGTTAAGCTGCTGGGCCTCCGGAGAC-- 34415 Query 22809 TTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGA 22868 ||| | || | |||||| | | ||| |||||||||| |||||| ||||| || |||| Sbjct 34414 --TCGAATGGGAATCGCATCTTGATGAAGGCGTCCGCCAAACCCTGCACGCCGATCCCGA 34357 Query 22869 TCGGTCGGTTTTTCAGATTCGA-CACTTT--TGCCTCGGGCAAAGGATACCAATTCGAAT 22925 | || |||| | || ||||| | | | | ||||| | ||| || | || | Sbjct 34356 TGGGGCGGTGTCGCATGTTCGAGCGCCTGGCTTCCTCG---ACAGGGTAGTAGTTGATGT 34300 Query 22926 CGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGT 22985 |||| | ||||| ||||| ||||| | ||||| || | | || Sbjct 34299 CGATGACGCGGTTCAGGTTTCGTGTCACCACCTTCGTGATTTCATACAGCCGCTGCAGGT 34240 Query 22986 CGTAAACGCCCGATTGTAC---AACAAA--------CTTGT-TGACGGCGA------TC- 23026 ||||| | || | | | | | |||| ||| ||| || Sbjct 34239 CGTAAGTGGGCGTCTTCCCGCTACCGGAGCCCTCCCCTTGGATGAATGCGGAAAGGTTCA 34180 Query 23027 --GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTAC 23084 ||||| || ||||| || || ||||| || ||||||||||| | || || || | Sbjct 34179 CGGAGGCCAGGTTGCAGACCGCGACCTCATCGGGCGACGTGTACTCGATGATCTCCGTGC 34120 Query 23085 ATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAAT 23144 | |||||| | || || |||||||| || |||||| ||| | ||||| | | Sbjct 34119 ACAGATTGGATGATTTGATGGTGCCCAAGTTCTGCTGGTTTGATTTCAGGTTGCAGGCGT 34060 Query 23145 CCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 ||||| | |||||||| |||||||| ||||| ||||| || || | ||||| ||| | Sbjct 34059 CCTTGAACAGCATGTAAGGCGTGCCTGTCTCCACCTGGGAGTCCAGAATCGCGAACCAGA 34000 Query 23205 TAGTCTGAGCGTGAACA-CGTCGCACGTACCTGCCTTCT-TCCTCGTACTTTTGGTACAA 23262 ||| || | || | | | || || | | || || | |||||| | ||| | Sbjct 33999 GCTGCTGGGCCTTAATAACCTTGC--GTGCTTTCCCACTCTTCTCGTAGCTGGCGTAGAG 33942 Query 23263 CGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322 | || ||| || | ||| | ||| |||||||| || | | | || || | || Sbjct 33941 CTGGTTAAACTCCTCGCCGCACACGTCCGCCAGGCCCGGGCACTCGTTGGGGCAAAAAAG 33882 Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382 ||| ||| | || ||||| | ||| || || || || |||| || ||||| Sbjct 33881 GGACCAGTCCCCGTCGCTCTCCACGCGCCGCATGAACAGGTCGGGCGTCCAGAGGGCGTA 33822 Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442 |||||| || || || ||| || ||| |||||| |||||| || |||| || || Sbjct 33821 GAACAGATCACGTGCACGCTCCAACTCGTTGCCGTGGTTCTTACGCAGGTCCAGGAATTC 33762 Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502 || | ||| |||||||| ||||| ||||| | ||| || | ||| | ||| || Sbjct 33761 AAAGATGTCTGCATGCCAGGGCTCTAGGTAGATGGCGAAGGAACCCTTGCGCTTGCCTCC 33702 Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562 |||||| |||||||| |||||||| | |||| | || | ||||| || |||| ||||| Sbjct 33701 GCCCTGGTCGACGTAGCGGGCCGTATCGTTGAAAACGCGGAGCATAGGTACGATGCCGTT 33642 Query 23563 GGACGCGCCGCCTACGC-CCGCCACACTCGAAC-CTTTTGCTCGAACGTTGTGAACGTGG 23620 ||| | |||| | || || | | | | | || || |||| |||||| | ||| Sbjct 33641 GGAGGTGCCG--TTCGATCCACGAATGTAGGAGTCTCGCGCCCGAATGTTGTGGA--TGG 33586 Query 23621 AAAC--CTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGA 23678 | || | || || || | |||| || || |||||||| || || |||||||||| Sbjct 33585 ATACGCCAATCCCACCCGCAAATTTGGAAATGGCAGCGCATTGCTTGAGGGTGTCGTAGA 33526 Query 23679 TGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGG 23738 |||| |||||| |||||| || | | | | ||| || || || | ||| | | Sbjct 33525 TGCCGTCGATGGAGTCCTCCTTCATGGTCAGGAGGAAGCAGGAGGAGAGTTGGGGCCGCG 33466 Query 23739 GCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGT--AAAGTATCCATTCGACATTAG 23796 | || |||| ||| ||||| || | || ||||| ||||| | |||||| || Sbjct 33465 GTGTGCCGGCATTGAAAAGTGTAGGCGTAGCATGCGTGAAAAGTTT--GAGCGACATGAG 33408 Query 23797 ATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCAT 23856 |||||| || || | || || ||||||| |||| ||| ||||| || || || ||||| Sbjct 33407 ATTGTAGGTCTCCAGCGCCGCGTCAATGTTCTCTTTGTGGATACCAATTGCCACACGCAT 33348 Query 23857 CATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTG 23916 ||||||| || || | ||| | || ||||| || || | || || || || Sbjct 33347 GATCATGTGCTGGGGGCGCTCCATAACTACCCCGTTCATCTTAAGAAGGTACGACTTTTC 33288 Query 23917 CATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 || ||||||||| ||||| |||||||| | |||||| || || | | || | ||| || Sbjct 33287 CAGCGTTTTAAAGCCAAAGTAGTCATAATCAAAGTCCCGGTCATAAATAATTGACGAGTT 33228 Query 23977 CAAACGGT 23984 || |||| Sbjct 33227 CAGGCGGT 33220 >seq1319 Length=24917 Score = 257 bits (284), Expect = 1e-63 Identities = 632/944 (67%), Gaps = 16/944 (2%) Strand=Plus/Plus Query 23026 CGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACA 23085 ||| || || ||||| || |||||||| || | |||||| | || || ||||| || Sbjct 9013 CGACGCCAGGTTGCAGACCGCCACCTCTTCCGCGCTCGTGTATTGGACGATCTCGGTGCA 9072 Query 23086 TAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATC 23145 |||||| |||| || |||||||| || |||||||| || | ||||| | || Sbjct 9073 CAGATTGGATGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCAGGTTGCAAGCGTC 9132 Query 23146 CTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACAT 23205 |||||| |||||||| |||||||||||||| | |||||| || | ||| || ||||| Sbjct 9133 CTTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCCAAGATGGCAAACCACA- 9191 Query 23206 AGTC-TGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAAC 23263 |||| ||||| | || ||| || | ||| ||| ||||| ||| || | Sbjct 9192 AGTCCTGAGCACGCACT-GTCTTCTTGACTCGGCCCTCTCGTTCGTATTTTAAATATAGG 9250 Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGG-ACACATGAG 23322 | || | |||| ||||| || || ||||| | || ||||| ||||||||| Sbjct 9251 TCCCGGAAGGCCTGGCCGTGGCAGTCCGCGAGACCGGGGCACTG-ATCGGGACACATGAG 9309 Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTC-ATAAAAAGATCCGGTATCCATAGAGCGT 23381 ||| | || | || || | |||| || || || || || |||||||| | | Sbjct 9310 GGACCAGGTCCTATCCTCCTCCACCC-TCTCCATGAACAGGTCGGGAATCCATAGTCCAT 9368 Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441 |||| || || ||||| ||| ||||||| || ||| |||||| || |||| | | Sbjct 9369 AGAAGAGATCCCGGGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGCAGGTCCAGCACTT 9428 Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501 | || | |||||| ||||||||||| ||||| | |||||| || || || ||||| | Sbjct 9429 CAAAGATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCCCCTGGCCTCTTGCCTC 9488 Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561 | ||||| || ||||| || |||||| || | | || || ||||| ||||| ||||||| Sbjct 9489 CCCCCTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGGCACCAGACCGT 9548 Query 23562 TGGACGCGCCGCCTAC--GCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTG 23619 || | || | ||| | |||| | | || | || || | |||||| || Sbjct 9549 TG--CTCGTCCCCTTCGTGCCCTTAATGTAGGCGCCGTGCGCGCGGATGTTGTGGACCGA 9606 Query 23620 GAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGAT 23679 || || || || || ||| || ||||| ||||| || ||||| ||||||||||| Sbjct 9607 GAGGCCGATTCCCCCCGCCGCCTTGCTTATCACGGCGCACTGCTTCAGCGTGTCGTAGAT 9666 Query 23680 GCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGG 23739 || |||| |||| ||| | || | | ||| ||||| ||||| |||| | Sbjct 9667 ACCAACGATCGAGTCCGCTTGCATGGCCAGGAGGAAGCACGAGGACATCTGCGGGAAACG 9726 Query 23740 CGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATT 23799 ||| | || ||| || || ||| |||||| | || | || ||| || | Sbjct 9727 CGTGCCCGCGTGGAAAAGAGTAGGGGAGGCGTGGATGAACCACTTGTTGCTCATGAGCTC 9786 Query 23800 GTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCAT 23859 ||| || || | |||||| | |||||||| || ||||| | ||| ||||||| | Sbjct 9787 GTAGGTCTCCAAGGCGGCGGGCAGATCCTCTCCATGGATACCAAGGGCCACGCGCAGAAG 9846 Query 23860 CATGTATTGAGGTCTCTCGAC--CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGC 23917 |||||| || || | ||| || | | |||| || || | || || | |||| | Sbjct 9847 CATGTACTGCGGGCGCTCCACCACCTTGCGCC--CGATCTTCAGCAAGTAGGCTCGTTCC 9904 Query 23918 ATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTG 23961 || ||||| || || ||||||||| || | | || || ||||| Sbjct 9905 ATGGTTTTGAAGCCGAAATAGTCAAAGAAATAATCGCGCTCGTG 9948 Score = 89.7 bits (98), Expect = 5e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 22107 TGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCG 22166 |||| || || || || ||||||||||| || |||||||| || | ||| ||||| || | Sbjct 7827 TGTCGACGGTGAATTGAATGGCGTTTGCTGCGGGTTTGGTTCGCAAATAGTACATACCTG 7886 Query 22167 TCTTCAGACCCATCTTCCACGCGTAAAAATGTAT 22200 |||| |||||| ||||||| |||||||||| || Sbjct 7887 TCTTGAGACCCCTCTTCCAGCCGTAAAAATGCAT 7920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445728175531200