Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq5823 154 3e-32 seq2149 87.8 4e-12 >seq5823 Length=45548 Score = 154 bits (170), Expect = 3e-32 Identities = 408/617 (66%), Gaps = 6/617 (1%) Strand=Plus/Minus Query 35165 ACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGACACTATT 35224 ||||| || || || | ||||| |||| | |||| || || || || || || || Sbjct 6283 ACAGGCACCCTCTCAAAATTTGGCGCCCAGCTTCGGTTTTCCCTGCGTGATGAGACCTTT 6224 Query 35225 CCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTC 35284 || | ||||| |||||| | || ||| | || || | |||||||||| ||||||| Sbjct 6223 CCGTTGCTCACCACCAAGCGGGTCTTTTGGCGCGGGGTGGCCGAAGAACTCTTGTGGTTC 6164 Query 35285 ATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGAACGCT 35344 ||| || || || || || | ||| |||| || || |||||| ||| Sbjct 6163 ATCTCCGGATCGACCGATGCGAATTATTTGAAGGAGAAAAAAATTGGAATCTGGGACGGG 6104 Query 35345 AATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTG 35404 || || ||||||| | |||||| || | | | | | |||||| |||||| Sbjct 6103 AACTCCTCCCGGGAATATCTGGACAAATTGGGCCTTTCTCACCGGGAAGAGGGGGATTTG 6044 Query 35405 GGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT-ACCTGTTCTTC 35463 || ||||| ||||| ||||||||||| ||||| || || || ||| || || | | Sbjct 6043 GGCCCCGTCTACGGCTTCCAATGGCGGCATTTCGGGGCGGAGTATTCGGACATGCACA-C 5985 Query 35464 CGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAAAA 35523 || || ||||| || || || || || ||||| | ||| ||| | | || || Sbjct 5984 AGACTACACTGGCAAAGGCATCGACCAGTTGGCTCGGGCAATAACCACCATCAAGGACAA 5925 Query 35524 TCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGC 35583 ||||| ||| | | || ||| | |||| ||||| || |||| | ||||| Sbjct 5924 CCCAGAGGATCGCCGCATCATTGTATCGGCCTGGAACCCCGCGGATTTGGGAAAGATGGC 5865 Query 35584 TCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCA 35643 || || || || |||||| | ||||| || || || | ||||| | || || || Sbjct 5864 CCTGCCGCCGTGTCACATGTTTTGCCAATTCTACGTCGCAGACGGAGAGCTCTCTTGTCA 5805 Query 35644 GTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTC 35703 | |||||||||| || ||| | |||||||| ||||| ||||||||||| || ||| | Sbjct 5804 GATGTATCAGCGTTCCGCAGACATGGGGTTGGGTGTGCCGTTCAATATTGCCTCTTACGC 5745 Query 35704 TCTTCTGACTCATCTGATGG--CCAGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCTC 35761 || |||| | || | | | ||| | |||| | | ||| | |||||||| || | | Sbjct 5744 ACTCTTGACACGCTTGGTAGCTCAAGTCT-GTGGCT-TGAAAGCCGGAGAGTTCATTCAC 5687 Query 35762 ACTCTTGGTGACGCACA 35778 || |||| || ||||| Sbjct 5686 ACGATTGGGGATGCACA 5670 >seq2149 Length=43014 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 93610 TACATGTTGGACGTTAAAGGCTCAAAGGATTCAGAGTTGCCCAGGATCTGTGCAGTGGAT 93669 |||||||| || || |||||||||| || || ||||||||||||||| ||||| ||| Sbjct 34729 TACATGTTCGATGTGAAAGGCTCAACAGACTCGTTGTTGCCCAGGATCTGCGCAGTAGAT 34670 Query 93670 GCAGTAGGCATGGGAGCAACAAACATTGAATTGTGAACACC 93710 || ||||||||||| || | || | ||| ||| | ||||| Sbjct 34669 GCGGTAGGCATGGGTGCGAGCAATAGTGAGTTGCGGACACC 34629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989497021751300