Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq5823 104 2e-17 >seq5823 Length=45548 Score = 104 bits (114), Expect = 2e-17 Identities = 176/255 (69%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 ||| || || || || || | ||||| | || ||||| | ||| ||| ||| || Sbjct 5663 GTACACATGTGCATCCCCAATCGTGTGAATGAACTCTCCGGCTTTCAAGCCACAGACTTG 5722 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 ||| | || |||| ||| ||||| ||| || || ||||| || || | ||||| Sbjct 5723 AGCTACCAAGCGTGTCAAGAGTGCGTAAGAGGCAATATTGAACGGCACACCCAACCCCAT 5782 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACA 21124 ||| ||||| | ||| |||| ||| || || ||||| || || ||||| || || || Sbjct 5783 GTCTGCGGAACGCTGATACATCTGACAAGAGAGCTCTCCGTCTGCGACGTAGAATTGGCA 5842 Query 21125 CAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACAT 21184 || | |||||| || || || |||||| | | |||||||||||||| || | | Sbjct 5843 AAACATGTGACACGGCGGCAGGGCCATCTTTCCCAAATCCGCGGGGTTCCAGGCCGATAC 5902 Query 21185 AACGATGCGCCGATC 21199 || |||||| ||||| Sbjct 5903 AATGATGCGGCGATC 5917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427740235252800