Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1319 141 1e-28 >seq1319 Length=24917 Score = 141 bits (156), Expect = 1e-28 Identities = 366/555 (66%), Gaps = 2/555 (0%) Strand=Plus/Minus Query 96825 GGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGGGCGGC 96884 || || ||||| |||||||| | | | | | | | | || ||||| ||||| || Sbjct 9546 GGTCTGGTGCCCATGCTCAGGGTCTTCGACGTCACGGCGCGCTACGTGGACCAGGGGGGA 9487 Query 96885 AATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGAC 96944 || ||||||| || | ||| ||||| |||| || |||||||||||| | ||||| Sbjct 9486 GGCAAGAGGCCAGGGGCCTTTGCCATCTACCTGGAGCCGTGGCACGCGGACATCTTTGAA 9427 Query 96945 TTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTAT 97004 | | || |||| || ||| || || ||||| || ||| |||| | || ||| Sbjct 9426 GTGCTGGACCTGCGGAAGAACCACGGAAAGGAGGAGGCGCGGGCCCGGGATCTCTTCTAT 9367 Query 97005 GCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTA 97064 | ||| ||| | || || |||||||| || | || | || | | | |||| ||| Sbjct 9366 GGACTATGGATTCCCGACCTGTTCATGGAGAGGGTGGAGGAGGATAGGACCTGGTCCCTC 9307 Query 97065 ATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAG 97124 ||||| ||||| || |||||||| | || ||| ||| | | || || | Sbjct 9306 ATGTGTCCCGATCAGTGCCCCGGTCTCGCGGACTGCCACGGCCAGGCCTTCCGGGACCTA 9247 Query 97125 TACACGGCCTACGAGCAAGAGGGCCGATACGTGA-GACGAGTCGATGCACGAGAACTGTG 97183 || ||||| | |||||||||| | || ||| ||| ||| | || |||| Sbjct 9246 TATTTAAAATACGAACGAGAGGGCCGAGTCAAGAAGAC-AGTGCGTGCTCAGGACTTGTG 9188 Query 97184 GAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATAC 97243 | |||||| || | ||| | ||||| || || || ||||| || |||||||| | Sbjct 9187 GTTTGCCATCTTGGACTCGCAGATTGAGACGGGCACGCCCTACATGCTGTACAAGGACGC 9128 Query 97244 CGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCAC 97303 || | || |||||||||| ||||||||||||||||| |||||||||||||| Sbjct 9127 TTGCAACCTGAAGAGCAACCAACAGAACTTGGGCACCATCAAGTCATCCAATCTGTGCAC 9068 Query 97304 GGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAA 97363 || || || | ||| | |||| ||| ||| || ||| ||||| ||||| Sbjct 9067 CGAGATCGTCCAATACACGAGCGCGGAAGAGGTGGCGGTCTGCAACCTGGCGTCGGTGGT 9008 Query 97364 TCTGCCCAAGTTTGT 97378 |||||||| || || Sbjct 9007 GCTGCCCAAATTCGT 8993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740995654173600