Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq5823 141 6e-29 >seq5823 Length=45548 Score = 141 bits (156), Expect = 6e-29 Identities = 326/486 (67%), Gaps = 19/486 (4%) Strand=Plus/Plus Query 25422 TTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCT 25481 ||||||| ||||| |||| |||||| || || || || || | ||||| | |||||| Sbjct 5640 TTCAGCGCGTCTACATGATTCAGGTACACATGTGCATCCCCAATCGTGTGAATGAACTCT 5699 Query 25482 CCCGGTT-CTAGCC-CGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGA 25539 || | || | |||| | | || | ||| | || | || | ||| ||| ||| | Sbjct 5700 CCGGCTTTCAAGCCACAG--ACTTGAGCTACCAAGCGTGTCAAGAGTGCGTAAGAGGCAA 5757 Query 25540 TGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGC 25599 | || || || || || ||||||||||| | || | ||| || | |||||| |||||| Sbjct 5758 TATTGAACGGCACACCCAACCCCATGTCTGCG-GAACGCTGATACATCTGACAAGAGAGC 5816 Query 25600 TCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCC 25659 ||| |||| ||||| || || || | ||| ||||| || || || || ||| Sbjct 5817 TCTCCGTCTGCGACGTAGAATTGGCAAAACATGTGACACGGCGGCAGGGCCATCTTTCCC 5876 Query 25660 AAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTTGTCCCTGATA 25719 || || ||||||||||| | || ||||||| | || |||||||||||| |||| Sbjct 5877 AAATCCGCGGGGTTCCAGGCCGATACAATGATGCGGCGATCCTCTGGGTTGTCCTTGAT- 5935 Query 25720 AGATCCGCGGTGTTTTG-------CAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCT 25772 | ||| | ||| || ||| || | || | || | |||||||| Sbjct 5936 -----GGTGGT-TATTGCCCGAGCCAACTGGTCGATGCCTTTGCCAGTGTAGTCTGTGTG 5989 Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 |||||||| ||||| || ||||||| || ||| ||||| ||||| || || || | || Sbjct 5990 CATGTCCGAATACTCCGCCCCGAAATGCCGCCATTGGAAGCCGTAGACGGGGCCCAAATC 6049 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || ||||||| ||| || |||| || |||| | | || | ||| || |||| Sbjct 6050 CCCCTCTTCCCGGTGAGAAAGGCCCAATTTGTCCAGATATTCCCGGGAGGAGTTCCCGTC 6109 Query 25893 CCAGAT 25898 |||||| Sbjct 6110 CCAGAT 6115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340109162370780