Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq802 95.1 1e-14 seq259 93.3 4e-14 >seq802 Length=4370 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | ||| ||||| ||||||||||| || || || || || | ||| || || | Sbjct 260 CCACCACGCAAGCGCAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 319 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| || |||||||| ||||| | || |||| | |||||||| || ||| Sbjct 320 AGCGTGCGTCCGTCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGA 379 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | ||| ||| ||| || ||| || || | | ||||| Sbjct 380 ATGCCCTCCTTGTCTTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACA 439 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAACATAT 95020 || | |||||||| || || || || || || || |||||||||||| || |||| || Sbjct 440 TCCAATGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGGTTGAAACAGAT 499 >seq259 Length=12200 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 94775 TACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAA 94834 || || || || | |||||||| ||||| || | ||||| || || || | ||| || Sbjct 5808 TAGACACCGCCACGCAATCGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAG 5749 Query 94835 TCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCT 94894 || || ||| ||||||||||| || || |||| || | | |||||||| Sbjct 5748 TCAGACAACGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCA 5689 Query 94895 GGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG 94954 || || ||||| || ||||| | ||| || ||| || ||| |||||| | | Sbjct 5688 GGGGGGATACCCTCCTTGTCCTGAATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGC 5629 Query 94955 TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 || ||||| | ||||||||| || || || || || || |||||||| ||||| || Sbjct 5628 TCCACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTAACAAAGATTTGCATCCT 5573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448252759029600