Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq2348 616 2e-171 >seq2348 Length=90098 Score = 616 bits (682), Expect = 2e-171 Identities = 717/966 (74%), Gaps = 6/966 (1%) Strand=Plus/Plus Query 135365 TGGGAACAGTTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTT 135424 ||||| | |||||| ||| | || ||||| || ||||| | || | |||||||| Sbjct 63515 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 63574 Query 135425 GGAACGCTGATGATTCCTACTCTTCTCGCAGCTGCTATCTGCTTTATTGTTGCTTTCATC 135484 || | ||||| ||||| | | ||||| | | |||||| || | ||||||||| Sbjct 63575 GGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 63634 Query 135485 GCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTAC 135544 || |||||||| || ||||| || || ||||| ||||| || ||||| || || | ||| Sbjct 63635 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 63694 Query 135545 GGAAATAACATCATCTCTGGTGCTGTTATCCC---TTCTAGCAACGCCATCGGCCTTCAC 135601 ||||| ||||| ||| | ||||| ||||| || |||| ||||| || || ||||| Sbjct 63695 GGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCT---AACGCTATTGGTATTCAC 63751 Query 135602 TTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTAT 135661 ||||| || | ||||||||||| ||| | || || ||||| || || ||||||||||| Sbjct 63752 TTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTAC 63811 Query 135662 CAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAA 135721 ||||| || || || |||||| | | ||||| | |||||||| || || |||||| Sbjct 63812 CAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAA 63871 Query 135722 CTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCC 135781 || ||||| | || ||||| |||||||||| || |||| |||||| || || || Sbjct 63872 CTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCT 63931 Query 135782 GCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATG 135841 || || | ||| || ||| | | ||||| | ||||||||| ||| |||||||||| Sbjct 63932 GCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATG 63991 Query 135842 CCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATT 135901 || | || || ||||| ||||| |||| |||| | || ||||| ||||||||||||||| Sbjct 63992 CCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATT 64051 Query 135902 CTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCT 135961 || ||||| || ||||| ||| || |||||||| || || ||||| ||| | ||| | Sbjct 64052 CTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGT 64111 Query 135962 GCTATGCATGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCC 136021 || |||||||| |||||||| || |||||| | | ||||| || || | | ||| Sbjct 64112 GCAATGCATGGTTCTCTTGTAACATCTAGTTTAATCCGTGAAACTGAAGACGGTGTATCT 64171 Query 136022 CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCAT 136081 ||||| |||||||| || || ||||||||||| ||||||||||| || ||||| || Sbjct 64172 GCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACAC 64231 Query 136082 GGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACAC 136141 |||||||| || ||| | ||||||||||| || ||||||||||| ||| | ||||| Sbjct 64232 GGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACAC 64291 Query 136142 TTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACG 136201 || ||| | ||||||||||| ||||| ||||||||||| |||| || || | || Sbjct 64292 TTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACA 64351 Query 136202 ATGGCGTTCAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGT 136261 ||||| |||||| | || ||||||||||||||||| || |||| | |||||||| Sbjct 64352 ATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGT 64411 Query 136262 GTACTCAACACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCAC 136321 || ||||||| ||||| || | | || ||||||| | | |||||||| || |||||| Sbjct 64412 GTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCAC 64471 Query 136322 GAGCGT 136327 || ||| Sbjct 64472 GAACGT 64477 Score = 598 bits (662), Expect = 5e-166 Identities = 739/1008 (73%), Gaps = 2/1008 (0%) Strand=Plus/Minus Query 137877 GATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTTTT 137936 ||||||||| | ||||||||||| || |||||| | |||||||| || || || | ||| Sbjct 5087 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 5028 Query 137937 CCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCTGG 137996 || || || | | | || ||||||| ||| | || || || || ||||||||| ||| Sbjct 5027 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 4968 Query 137997 TACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTGTT 138056 ||||| || || || || ||| ||| | || || || ||| | || | |||||| Sbjct 4967 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAACTTCTTAACTGTAGCTGTA 4908 Query 138057 TCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAA 138116 || || ||||| || |||||||||||| | | || | ||||| || ||| | ||| Sbjct 4907 TCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACAA 4848 Query 138117 GGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGG 138176 |||||| | || ||| | ||| | || ||| | ||||||||||| || | || ||| Sbjct 4847 GGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGGG 4788 Query 138177 GCCTTTAGTCTGATTGGATTCATGCTT-CGCCAGTTTGAGATCTCTCGTCTGGTAGGCAT 138235 || ||| | | ||||||||| || || || || ||||| || ||||||| ||||| || Sbjct 4787 GCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTAT 4729 Query 138236 CCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCT 138295 ||||| || || ||||| ||||| || || || ||||| || ||||| || ||| | Sbjct 4728 TCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCTT 4669 Query 138296 GATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAAT 138355 || |||||||| || ||| | ||||||||||||||||| ||||| || ||||| || Sbjct 4668 AATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTAT 4609 Query 138356 CTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATAT 138415 ||||||||||| || ||| | || ||||||||||||||||| || || || || || || Sbjct 4608 TTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACAT 4549 Query 138416 GATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGT 138475 |||||| |||||||| ||| | |||||||| || | | ||| |||||||| ||||| || Sbjct 4548 GATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTGT 4489 Query 138476 AGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTAC 138535 |||||| || || | |||||||| || | ||||| || || || ||| || Sbjct 4488 AGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCAAC 4429 Query 138536 TCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGG 138595 ||| ||||||||| ||||||||||| || || ||| | | |||||| ||||| ||||| Sbjct 4428 ACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCACAAATTTTTGG 4369 Query 138596 AATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCATGGG 138655 |||||||| ||| || ||||||||||| ||||| ||| | |||||||| || | || Sbjct 4368 TGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAGG 4309 Query 138656 TCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATGATTT 138715 | | ||||| ||| | ||||||| | ||| | || | ||| || |||| ||||| || Sbjct 4308 TTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGACTT 4249 Query 138716 CGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAGAA 138775 ||||| ||||| |||||||||| |||||||| ||||| || || ||||| || || || Sbjct 4248 TGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAAA 4189 Query 138776 CATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTCACGAAAA 138835 || | | || |||||| | | | |||||||| | ||| ||||| || ||||| Sbjct 4188 TATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAAA 4129 Query 138836 CTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCTGTGATA 138883 ||||| || || || || || || ||| | || ||||| || | ||| Sbjct 4128 TTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATA 4081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627914151744000