Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq2348 513 4e-141 >seq2348 Length=90098 Score = 513 bits (568), Expect = 4e-141 Identities = 698/974 (72%), Gaps = 0/974 (0%) Strand=Plus/Plus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| |||| || || || ||||| | || | |||||||| || || | ||||| ||| Sbjct 63533 TGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCT 63592 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 ||| || | ||||| | ||||| || |||| || ||||||||||| || |||||| Sbjct 63593 ACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGAT 63652 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || ||||| ||||| | || || | | ||||||||||| ||||| | Sbjct 63653 ATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACA 63712 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 || || || ||||||| || || || || || | ||||| || || | |||||||| Sbjct 63713 GGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCT 63772 Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTC 19598 | || |||| || ||| | |||||||| ||||| || |||||||| || || |||||| Sbjct 63773 GCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTC 63832 Query 19599 TTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATG 19658 ||| |||| ||||| ||| || | | |||||||| ||| | ||||| ||| Sbjct 63833 TTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATG 63892 Query 19659 AGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTC 19718 | || ||||| |||||||| | |||| ||| || | ||||| ||| || || | Sbjct 63893 CGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTA 63952 Query 19719 GTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACT 19778 |||||||| | || ||||| || || ||||||||||||| | ||||||||||||||| Sbjct 63953 ATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACT 64012 Query 19779 TTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATG 19838 || ||||| ||||| |||||||||||||||||||| || |||||||| || ||||| ||| Sbjct 64013 TTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATG 64072 Query 19839 CTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTT 19898 ||||||||||| || || ||||||||| | ||| ||| ||||| || | | || Sbjct 64073 GCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGTA 64132 Query 19899 ACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTC 19958 || || | ||| ||||| || | |||||| ||||| || || || || Sbjct 64133 ACATCTAGTTTAATCCGTGAAACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTT 64192 Query 19959 GGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATA 20018 || ||||| ||||| || || || || || ||||||||||| |||||||| | || || Sbjct 64193 GGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATC 64252 Query 20019 TTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCC 20078 || ||||| || |||||| || || ||| ||||||| ||||| | ||| ||| || Sbjct 64253 TTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCA 64312 Query 20079 GTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGT 20138 || || || || ||| | || | | ||||| |||| ||||| |||||| | || || Sbjct 64313 GTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGA 64372 Query 20139 TTTAACTTTAACCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAACATGGGCTGAT 20198 || ||||| ||||| ||||| |||||| | | || | ||| || |||||||| Sbjct 64373 TTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGAC 64432 Query 20199 GTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTC 20258 | | || | ||| | | || | ||||| |||||||| || || || || |||||| Sbjct 64433 ATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTC 64492 Query 20259 CCACTTGATTTAGC 20272 || || |||||||| Sbjct 64493 CCTCTAGATTTAGC 64506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144429833426160