Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq2348 679 0.0 >seq2348 Length=90098 Score = 679 bits (752), Expect = 0.0 Identities = 719/945 (76%), Gaps = 8/945 (1%) Strand=Plus/Plus Query 211612 GGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTA 211671 |||||||| |||||| | |||||||| | || | || |||| ||||| ||| | Sbjct 63566 GGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATC 63625 Query 211672 GCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCA 211731 || ||||||||||||||||| || |||||||| || |||||||||||||| ||||| ||| Sbjct 63626 GCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCA 63685 Query 211732 TTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 211791 | | || || |||||||| ||| | ||||| ||| ||||| ||| ||||| || ||| Sbjct 63686 CTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGT 63745 Query 211792 TTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGT 211851 | |||||||| || | |||||||| || || | || || ||||| ||||| |||||| Sbjct 63746 ATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGT 63805 Query 211852 CCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAG 211911 |||||||| | ||| | || |||||| | | || | | ||||||||| | | Sbjct 63806 CCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAA 63865 Query 211912 TGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCT 211971 ||||||||| ||||||||||| |||||||||||||| | || |||| ||||| || Sbjct 63866 TGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCA 63925 Query 211972 GTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGAC 212031 ||| | ||||| || |||||| | |||||||| |||| || ||| ||||| || Sbjct 63926 GTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGAT 63985 Query 212032 GGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACAT 212091 ||||||||||||||||| || || || |||||||||||||| ||||||||||||||||| Sbjct 63986 GGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACAC 64045 Query 212092 AACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTA 212151 ||||| ||||||||||||||||||||||| |||||||| ||| |||| |||||| | ||| Sbjct 64046 AACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTA 64105 Query 212152 TTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAAC----CACTGG 212207 ||| ||| ||||| ||||||||||| |||||| | ||||||||||| || || Sbjct 64106 TTCAGTGCAATGCATGGTTCTCTTGTAACATCTAGTTTAATCCGTGAAACTGAAGAC-GG 64164 Query 212208 TTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGT 212267 | || || ||||| |||||||| || |||||||||||||| || || |||||||| Sbjct 64165 TGTA---TCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGT 64221 Query 212268 TGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAG 212327 |||||||| || ||||| || | | |||||||| || ||| ||||||||| | Sbjct 64222 AGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACG 64281 Query 212328 AAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGG 212387 ||||||||||||| | || | ||||| ||| | || | |||||||| || | || Sbjct 64282 TGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGG 64341 Query 212388 TATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGC 212447 || ||||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 64342 AATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAG 64401 Query 212448 ATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGA 212507 |||| || | ||||||| ||| || | ||| | || | | |||||||| Sbjct 64402 CCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGA 64461 Query 212508 AGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||| ||||||||| | || || ||||||||||| || || ||||| Sbjct 64462 AGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGC 64506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807485952141600