Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04-
08] 6,860 sequences; 25,618,953 total letters
Query= NC_006884.2
Length=178249
Score E
Sequences producing significant alignments: (Bits) Value
seq2348 630 8e-176
>seq2348
Length=90098
Score = 630 bits (698), Expect = 8e-176
Identities = 749/1002 (75%), Gaps = 20/1002 (2%)
Strand=Plus/Plus
Query 170686 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTAAC 170745
||| || || || | ||| | |||||||| ||||| ||||||||||| | ||||
Sbjct 63544 CACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAAC 63603
Query 170746 TGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAAT 170805
||| | || ||||| | || |||||||| || |||||||| |||||||| || ||
Sbjct 63604 AGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTAT 63663
Query 170806 CAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGT 170865
| | |||||||| || || || | ||||| || |||||||| ||| | ||||| || |
Sbjct 63664 CCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTAT 63723
Query 170866 TCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGA 170925
|||| ||| ||||| || || | |||||||| || | |||||||| || || | ||
Sbjct 63724 TCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGA 63783
Query 170926 CGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATT-GGAA 170984
||| ||| | |||||||| ||||||||||| | || | || ||||| |||||| ||
Sbjct 63784 CGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTT-CTTATTAGGTG 63842
Query 170985 TCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGA 171044
| || ||||||||| | | |||||||| ||| | |||| ||| | |||||||
Sbjct 63843 TAGCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGA 63902
Query 171045 TATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCAT 171104
| | ||||| | |||||| || ||| |||||||| |||||||||| | | || |||
Sbjct 63903 TTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAA 63962
Query 171105 TCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCA 171164
|||| || ||| ||||||||||||||||| |||||||||| ||||| ||||||||||
Sbjct 63963 TCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCA 64022
Query 171165 TGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG 171224
|||| || |||||||||||||||||||| || |||||||| ||||||||||| ||||| |
Sbjct 64023 TGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTG 64082
Query 171225 CAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTC 171284
| ||| |||| ||||| | | |||||||||||||| |||||||| || |||||| |
Sbjct 64083 CTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGTAACATCTAGTT 64142
Query 171285 TAATCAGAGAGACAACTG-AGAACGAGAGTC--AAAACTACGGCTATAAGTTCGGACAAG 171341
||||| | || ||||| ||| | | || |||||||| || || || |||||||
Sbjct 64143 TAATCCGTGA---AACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAG 64199
Query 171342 AAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGT 171401
|||||||||| || ||||| || ||||| || || ||||| || | ||||||||||| |
Sbjct 64200 AAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAAT 64259
Query 171402 ATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCT 171461
| ||| ||||||||||| ||| | |||||||||||| | |||| | || || ||
Sbjct 64260 ACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAG 64319
Query 171462 GTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACT 171521
|| | |||||||| || | || || | ||||||||||||||| | |||||||||||||
Sbjct 64320 GTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACT 64379
Query 171522 TCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACA--TGGGGAGATGTTC 171578
|||||||||||||||| ||| || || | | || | ||||| |||| || ||
Sbjct 64380 TCAACCAATCAGTTGTTGATAGCCAA--GGTCGTGTG-ATCAACACTTGGGCTGACATTA 64436
Query 171579 TTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCAC 171638
| ||| | || | | || |||||||| ||||| ||| | || || ||||||||||| |
Sbjct 64437 TCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTC 64496
Query 171639 TAGACCTAGC---ATCTGCTGAGTCTACAACAGTTGCATTAA 171677
|||| |||| |||| || ||| | ||||||||||||
Sbjct 64497 TAGATTTAGCGGTATCTAATG-TTCTTC--CAGTTGCATTAA 64535
Score = 598 bits (662), Expect = 5e-166
Identities = 768/1048 (73%), Gaps = 41/1048 (4%)
Strand=Plus/Minus
Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854
|||||| | | ||||| |||||||| |||||||||||||||| || || ||||| |||
Sbjct 5099 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGT 5040
Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914
|||||| | || || || | || ||| | || || ||||| ||| ||||||||
Sbjct 5039 CTTTTATTATTTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTT 4980
Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974
|| || || |||||||||||||| | || || || || | |||||| ||||| |||
Sbjct 4979 GTTACATCTTGGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAACTTCTTA 4920
Query 171975 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTAT---GG 172031
|||| ||| ||||||||||||| || |||||||||| || |||| || ||| ||
Sbjct 4919 ACTGTAGCTGTATCAACACCTGCAAATAGTATGGGTCAT--TC-ATTGATCTTATTATGG 4863
Query 172032 GGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTT 172091
||||| ||||||||||||||| || || ||| ||||| |||||||| |||||| |||
Sbjct 4862 GGACCAGAGGCACAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTT 4803
Query 172092 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTA-GACAGTTTGAGATTGC 172150
|| ||||||||||| | |||||| | || || ||| || ||| |||| ||||| |||||
Sbjct 4802 GTCGCATTACATGGGGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGC 4744
Query 172151 AGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATT 172210
| ||||| || || ||||| || || ||| | ||||| |||| | ||| ||||||||
Sbjct 4743 TCGTCTTGTAGGTATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATT 4684
Query 172211 CACGAGCATCT---TTC-TAATATATCCATTAGGTC-AGCATAGTTGGTTCTTCGCACCT 172265
| | ||| ||| |||| ||||| ||||| | |||| ||||||||||| || |||
Sbjct 4683 C----GTTTCTGTATTCTTAATCTATCCTTTAGGACAAGCA-AGTTGGTTCTTTGCTCCT 4629
Query 172266 TCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATA 172325
||||| || ||||| || || || | | |||||| |||| |||||||| ||
Sbjct 4628 AGTTTTGGAGTTGCAGCTATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGG 4569
Query 172326 ACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGT 172385
|| ||||||||||| || ||||||||||||||||| || | ||||| ||| || ||| |
Sbjct 4568 ACACTTAATCCATTCCACATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCT 4509
Query 172386 GCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAA 172445
|| || ||||| || || ||| | |||||||| | ||| ||
Sbjct 4508 GCAATTCATGGAGCTACTGTAGAAAACACATTATTCGAA------------------GAT 4467
Query 172446 GGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTAT 172505
||| ||| | | | || ||| | || ||| || ||||| |||||||||||||
Sbjct 4466 GGT--GATGC-TGCGAATACATTCCGTGCTTTCACACCAACACAATCAGAAGAAACTTAT 4410
Query 172506 AGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAA 172565
||| | || || ||||||||||||||||| || |||||| | || ||||| ||||||
Sbjct 4409 TCAATGGTAACAGCGAACAGATTCTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAA 4350
Query 172566 AGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATA 172625
| | | || ||| | ||||| || || || || | ||| | |||||| ||| |
Sbjct 4349 CGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAGGTTTATGGACAAGTTCTTTT 4290
Query 172626 GGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGA 172685
||||| |||||| | ||| | ||| | |||||||| |||||||||||||||||| | |
Sbjct 4289 GGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGACTTTGTATCTCAAGAGCTTCGT 4230
Query 172686 GCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTT-AATGAAGG 172744
||||| ||||| ||||| |||||||| ||||| ||||| || | |||| || || |||||
Sbjct 4229 GCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAAATA-TCTTATTAAACGAAGG 4171
Query 172745 TATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGA 172804
||| ||| |||||||| | | || ||||| ||||| || ||||| |||||||| ||
Sbjct 4170 TATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAAATTTTGTATTCCCAGAGGA 4111
Query 172805 AGTCTTGCCACGAGGCAACGCACTATAA 172832
|| || ||||| || ||||| || |||
Sbjct 4110 GGTTTTACCACGTGGAAACGCCCTTTAA 4083
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570219899450400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |