Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq2348 630 8e-176 >seq2348 Length=90098 Score = 630 bits (698), Expect = 8e-176 Identities = 749/1002 (75%), Gaps = 20/1002 (2%) Strand=Plus/Plus Query 170686 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTAAC 170745 ||| || || || | ||| | |||||||| ||||| ||||||||||| | |||| Sbjct 63544 CACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAAC 63603 Query 170746 TGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAAT 170805 ||| | || ||||| | || |||||||| || |||||||| |||||||| || || Sbjct 63604 AGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTAT 63663 Query 170806 CAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGT 170865 | | |||||||| || || || | ||||| || |||||||| ||| | ||||| || | Sbjct 63664 CCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTAT 63723 Query 170866 TCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGA 170925 |||| ||| ||||| || || | |||||||| || | |||||||| || || | || Sbjct 63724 TCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGA 63783 Query 170926 CGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATT-GGAA 170984 ||| ||| | |||||||| ||||||||||| | || | || ||||| |||||| || Sbjct 63784 CGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTT-CTTATTAGGTG 63842 Query 170985 TCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGA 171044 | || ||||||||| | | |||||||| ||| | |||| ||| | ||||||| Sbjct 63843 TAGCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGA 63902 Query 171045 TATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCAT 171104 | | ||||| | |||||| || ||| |||||||| |||||||||| | | || ||| Sbjct 63903 TTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAA 63962 Query 171105 TCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCA 171164 |||| || ||| ||||||||||||||||| |||||||||| ||||| |||||||||| Sbjct 63963 TCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCA 64022 Query 171165 TGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG 171224 |||| || |||||||||||||||||||| || |||||||| ||||||||||| ||||| | Sbjct 64023 TGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTG 64082 Query 171225 CAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTC 171284 | ||| |||| ||||| | | |||||||||||||| |||||||| || |||||| | Sbjct 64083 CTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGTAACATCTAGTT 64142 Query 171285 TAATCAGAGAGACAACTG-AGAACGAGAGTC--AAAACTACGGCTATAAGTTCGGACAAG 171341 ||||| | || ||||| ||| | | || |||||||| || || || ||||||| Sbjct 64143 TAATCCGTGA---AACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAG 64199 Query 171342 AAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGT 171401 |||||||||| || ||||| || ||||| || || ||||| || | ||||||||||| | Sbjct 64200 AAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAAT 64259 Query 171402 ATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCT 171461 | ||| ||||||||||| ||| | |||||||||||| | |||| | || || || Sbjct 64260 ACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAG 64319 Query 171462 GTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACT 171521 || | |||||||| || | || || | ||||||||||||||| | ||||||||||||| Sbjct 64320 GTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACT 64379 Query 171522 TCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACA--TGGGGAGATGTTC 171578 |||||||||||||||| ||| || || | | || | ||||| |||| || || Sbjct 64380 TCAACCAATCAGTTGTTGATAGCCAA--GGTCGTGTG-ATCAACACTTGGGCTGACATTA 64436 Query 171579 TTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCAC 171638 | ||| | || | | || |||||||| ||||| ||| | || || ||||||||||| | Sbjct 64437 TCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTC 64496 Query 171639 TAGACCTAGC---ATCTGCTGAGTCTACAACAGTTGCATTAA 171677 |||| |||| |||| || ||| | |||||||||||| Sbjct 64497 TAGATTTAGCGGTATCTAATG-TTCTTC--CAGTTGCATTAA 64535 Score = 598 bits (662), Expect = 5e-166 Identities = 768/1048 (73%), Gaps = 41/1048 (4%) Strand=Plus/Minus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 |||||| | | ||||| |||||||| |||||||||||||||| || || ||||| ||| Sbjct 5099 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGT 5040 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 |||||| | || || || | || ||| | || || ||||| ||| |||||||| Sbjct 5039 CTTTTATTATTTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTT 4980 Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974 || || || |||||||||||||| | || || || || | |||||| ||||| ||| Sbjct 4979 GTTACATCTTGGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAACTTCTTA 4920 Query 171975 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTAT---GG 172031 |||| ||| ||||||||||||| || |||||||||| || |||| || ||| || Sbjct 4919 ACTGTAGCTGTATCAACACCTGCAAATAGTATGGGTCAT--TC-ATTGATCTTATTATGG 4863 Query 172032 GGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTT 172091 ||||| ||||||||||||||| || || ||| ||||| |||||||| |||||| ||| Sbjct 4862 GGACCAGAGGCACAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTT 4803 Query 172092 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTA-GACAGTTTGAGATTGC 172150 || ||||||||||| | |||||| | || || ||| || ||| |||| ||||| ||||| Sbjct 4802 GTCGCATTACATGGGGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGC 4744 Query 172151 AGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATT 172210 | ||||| || || ||||| || || ||| | ||||| |||| | ||| |||||||| Sbjct 4743 TCGTCTTGTAGGTATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATT 4684 Query 172211 CACGAGCATCT---TTC-TAATATATCCATTAGGTC-AGCATAGTTGGTTCTTCGCACCT 172265 | | ||| ||| |||| ||||| ||||| | |||| ||||||||||| || ||| Sbjct 4683 C----GTTTCTGTATTCTTAATCTATCCTTTAGGACAAGCA-AGTTGGTTCTTTGCTCCT 4629 Query 172266 TCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATA 172325 ||||| || ||||| || || || | | |||||| |||| |||||||| || Sbjct 4628 AGTTTTGGAGTTGCAGCTATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGG 4569 Query 172326 ACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGT 172385 || ||||||||||| || ||||||||||||||||| || | ||||| ||| || ||| | Sbjct 4568 ACACTTAATCCATTCCACATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCT 4509 Query 172386 GCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAA 172445 || || ||||| || || ||| | |||||||| | ||| || Sbjct 4508 GCAATTCATGGAGCTACTGTAGAAAACACATTATTCGAA------------------GAT 4467 Query 172446 GGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTAT 172505 ||| ||| | | | || ||| | || ||| || ||||| ||||||||||||| Sbjct 4466 GGT--GATGC-TGCGAATACATTCCGTGCTTTCACACCAACACAATCAGAAGAAACTTAT 4410 Query 172506 AGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAA 172565 ||| | || || ||||||||||||||||| || |||||| | || ||||| |||||| Sbjct 4409 TCAATGGTAACAGCGAACAGATTCTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAA 4350 Query 172566 AGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATA 172625 | | | || ||| | ||||| || || || || | ||| | |||||| ||| | Sbjct 4349 CGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAGGTTTATGGACAAGTTCTTTT 4290 Query 172626 GGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGA 172685 ||||| |||||| | ||| | ||| | |||||||| |||||||||||||||||| | | Sbjct 4289 GGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGACTTTGTATCTCAAGAGCTTCGT 4230 Query 172686 GCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTT-AATGAAGG 172744 ||||| ||||| ||||| |||||||| ||||| ||||| || | |||| || || ||||| Sbjct 4229 GCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAAATA-TCTTATTAAACGAAGG 4171 Query 172745 TATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGA 172804 ||| ||| |||||||| | | || ||||| ||||| || ||||| |||||||| || Sbjct 4170 TATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAAATTTTGTATTCCCAGAGGA 4111 Query 172805 AGTCTTGCCACGAGGCAACGCACTATAA 172832 || || ||||| || ||||| || ||| Sbjct 4110 GGTTTTACCACGTGGAAACGCCCTTTAA 4083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570219899450400