Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_007023.1 Length=180500 Score E Sequences producing significant alignments: (Bits) Value seq5823 91.5 2e-13 >seq5823 Length=45548 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 40698 CCAGACGATCGCGGGATCATCGTTTCCGCATGGAACCCTGTTGATCTGGATAAAATGGCA 40757 ||||| |||||| | ||||| || || || |||||||| | ||| ||| || ||||| Sbjct 5923 CCAGAGGATCGCCGCATCATTGTATCGGCCTGGAACCCCGCGGATTTGGGAAAGATGGCC 5864 Query 40758 TTGCGTCCGTGTCAC-TGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACA 40816 ||| ||||||||| ||||| | ||| ||| ||| |||| | || ||| || Sbjct 5863 CTGCCGCCGTGTCACATGTTT-TGCCAATTCTACGTCGCAGACGGAGAGCTCTCTTGTCA 5805 Query 40817 GTGGTATCAGCGTTCGGTTGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGC 40876 | |||||||||||| | || | || || ||||||||||||| ||||| ||||| Sbjct 5804 GATGTATCAGCGTTCCGCAGACATGGGGTTGGGTGTGCCGTTCAATATTGCCTCTTACGC 5745 Query 40877 TCTCCTGAC 40885 ||| |||| Sbjct 5744 ACTCTTGAC 5736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577422481776000