Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2149 288 3e-72 seq1319 224 3e-53 seq5823 91.5 4e-13 >seq2149 Length=43014 Score = 288 bits (318), Expect = 3e-72 Identities = 636/944 (67%), Gaps = 16/944 (2%) Strand=Plus/Plus Query 363363 TTATGAGAAGGATCTCGAGTATGA-TATTTTCGGATATAAGACGATGGAGAAATCCTACC 363421 |||||| ||| | || ||||| || ||| || | ||| ||| |||| || || |||| Sbjct 33242 TTATGACCGGGACTTTGATTATGACTACTTT-GGCTTTAAAACGCTGGAAAAGTCGTACC 33300 Query 363422 TATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTA 363481 | | || || || | || | || ||||| ||||| ||| | |||||||| || | Sbjct 33301 TTCTTAAGATGAACGGGGTAGTTATGGAGCGCCCCCAGCACATGATCATGCGTGTGGCAA 33360 Query 363482 TTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGT-GCT 363540 |||||||||| | | |||| || ||| | || || || || || | || ||| Sbjct 33361 TTGGTATCCACAAAGAGAACATTGACGCGGCGCTGGAGACCTACAATCTCAT--GTCGCT 33418 Query 363541 CGTG-TATTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGAT 363599 | | |||||||| || ||||| ||| | | |||||| || || | || || | Sbjct 33419 CAAACTTTTCACGCATGCTACGCCTACACTTTTCAATGCCGGCACACCGCGGCCCCAACT 33478 Query 363600 GTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACT 363659 || || ||||| || || | |||||||| || |||||||| || |||| ||||| || Sbjct 33479 CTCCTCCTGCTTCCTCCTGACCATGAAGGAGGACTCCATCGACGGCATCTACGACACCCT 33538 Query 363660 TAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGT 363719 ||| | || ||| |||||||| ||| || || ||||| ||||| |||||||| | Sbjct 33539 CAAGCAATGCGCTGCCATTTCCAAATTTGCGGGTGGGATTGGCGTATCCATCCACAACAT 33598 Query 363720 TCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCAT 363779 ||| || | || |||||||| || | || ||| || || | || || || Sbjct 33599 TCGGGCGCGAGACTCCTACATTCGTGGATCGAACGGCACCTCCAACGGCATCGTACCTAT 33658 Query 363780 GCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| || || || || |||| || | |||||||||||||| ||||| |||||||| || Sbjct 33659 GCTCCGCGTTTTCAACGATACGGCCCGCTACGTCGACCAGGGCGGAGGCAAGCGCAAGGG 33718 Query 363840 GGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCG 363899 | || || || || || ||||| ||||| || || ||||| || || || || || Sbjct 33719 TTCCTTCGCCATCTACCTAGAGCCCTGGCATGCAGACATCTTTGAATTCCTGGACCTGCG 33778 Query 363900 GAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTC 363959 || ||| || || ||| ||||||||||||||||||||| || || ||| | Sbjct 33779 TAAGAACCACGGCAACGAGTTGGAGCGTGCACGTGATCTGTTCTACGCCCTCTGGACGCC 33838 Query 363960 TGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGA 364019 |||| || ||| |||||||||| | | | ||||| || |||||||| |||| Sbjct 33839 CGACCTGTTCATGCGGCGCGTGGAGAGCGACGGGGACTGGTCCCTTTTTTGCCCCAACGA 33898 Query 364020 ATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGA 364079 || || || || | || || || || || || | | || |||| | || || Sbjct 33899 GTGCCCGGGCCTGGCGGACGTGTGCGGCGAGGAGTTTAACCAGCTCTACGCCAGCTACGA 33958 Query 364080 -ATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGG 364138 | | |||||| || || ||| ||| || ||| |||| ||||| || || ||| Sbjct 33959 GAAGAGTGGGAAA-GCACGCAAGGTTATTAAGGCCCAGCAGCTCTGGTTCGCGATTCTGG 34017 Query 364139 ATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGT 364198 | || ||| | |||||||| || || || ||| ||| ||| || | ||||||| || | Sbjct 34018 ACTCCCAGGTGGAGACAGGCACGCCTTACATGCTGTTCAAGGACGCCTGCAACCTGAAAT 34077 Query 364199 CCAACCAGCAGCACCTTGGTA----CAATTCAGCAGAGCAACCTATGTACCGAGATTATT 364254 | ||||||||| || | || | ||| ||| | ||| || || || ||||| || Sbjct 34078 CAAACCAGCAGAACTTGGGCACCATCAAATCATC----CAATCTGTGCACGGAGATCATC 34133 Query 364255 GAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTC 364298 || ||||| | ||||| ||| || || || ||||| || || Sbjct 34134 GAGTACACGTCGCCCGATGAGGTCGCGGTCTGCAACCTGGCCTC 34177 >seq1319 Length=24917 Score = 224 bits (248), Expect = 3e-53 Identities = 576/869 (66%), Gaps = 6/869 (1%) Strand=Plus/Minus Query 363445 GTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTT 363504 || || ||||||||| | ||| | |||| || || ||||||||||| | |||| | Sbjct 9867 GTGGAGCGCCCGCAGTACATGCTTCTGCGCGTGGCCCTTGGTATCCATGGAGAGGATCTG 9808 Query 363505 GATGCCGCGATTGAAACATATAAGCTTCTAAG-TGCTCGTGTATTCACGCACGCCACGCC 363563 ||||| | || || || |||| | || | ||| |||| |||||| | || Sbjct 9807 CCCGCCGCCTTGGAGACCTACGAGCTCATGAGCAACAAGTG-GTTCATCCACGCCTCCCC 9749 Query 363564 AACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAAT 363623 || | | | | || || || ||| || |||||||| || ||||| || || || Sbjct 9748 TACTCTTTTCCACGCGGGCACGCGTTTCCCGCAGATGTCCTCGTGCTTCCTCCTGGCCAT 9689 Query 363624 GAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAA 363683 | | | || || |||| ||||||| ||||| || ||| | || || | || ||| Sbjct 9688 GCAAGCGGACTCGATCGTTGGTATCTACGACACGCTGAAGCAGTGCGCCGTGATAAGCAA 9629 Query 363684 GAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCG 363743 | || || ||||| || | ||| ||||||| | || || || | |||||| Sbjct 9628 GGCGGCGGGGGGAATCGGCCTCTCGGTCCACAACATCCGCGCGCACGGCGCCTACATTAA 9569 Query 363744 CGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTG 363802 ||||| | ||||| | || || ||||| |||||||| | || || ||| || | Sbjct 9568 GGGCACGAAGGGGACGAGC-AACGGTCTGGTGCCCATGCTCAGGGTCTTCGACGTCACGG 9510 Query 363803 CGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGC 363862 || | ||||| |||||||| ||||| ||| | |||||| ||||| || || || |||| Sbjct 9509 CGCGCTACGTGGACCAGGGGGGAGGCAAGAGGCCAGGGGCCTTTGCCATCTACCTGGAGC 9450 Query 363863 CTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAAT 363922 | || || || || ||||| | || || || ||||| ||| ||||| ||||| Sbjct 9449 CGTGGCACGCGGACATCTTTGAAGTGCTGGACCTGCGGAAGAACCACGGAAAGGAGGAGG 9390 Query 363923 TGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGG 363982 ||| || || ||||| ||||||| ||| ||| || | |||| || ||| || | |||| Sbjct 9389 CGCGGGCCCGGGATCTCTTCTATGGACTATGGATTCCCGACCTGTTCATGGAGAGGGTGG 9330 Query 363983 AGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTAT 364042 ||| | || || ||||| ||| | || || | | || || ||||| | || Sbjct 9329 AGGAGGATAGGACCTGGTCCCTCATGTGTCCCGATCAGTGCCCCGGTCTCGCGGACTGCC 9270 Query 364043 GGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGG-AAAGGCTCGTAAG 364101 || | | || | ||||| ||| || ||| ||||| || | | ||| Sbjct 9269 ACGGCCAGGCCTTCCGGGACCTATATTTAAAATACGAACGAGAGGGCCGAGTCAAG-AAG 9211 Query 364102 ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACA 364161 ||| | | || ||| | | |||||||||||| |||| |||||||||||||| || || Sbjct 9210 ACAGTGCGTGCTCAGGACTTGTGGTTTGCCATCTTGGACTCGCAGATTGAGACGGGCACG 9151 Query 364162 CCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACA 364221 ||||| ||| ||||||| || | ||||||| ||| |||||| ||| || | || || Sbjct 9150 CCCTACATGCTGTACAAGGACGCTTGCAACCTGAAGAGCAACCAACAGAACTTGGGCACC 9091 Query 364222 ATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCC 364281 || || ||| || || |||||||| | ||||||| | || ||| || Sbjct 9090 ATCAAGTCATCCAATCTGTGCACCGAGATCGTCCAATACACGAGCGCGGAAGAGGTGGCG 9031 Query 364282 GTATGTAACCTTGCGTCGATCGCGCTTCC 364310 || || ||||| |||||| | | ||| || Sbjct 9030 GTCTGCAACCTGGCGTCGGTGGTGCTGCC 9002 >seq5823 Length=45548 Score = 91.5 bits (100), Expect = 4e-13 Identities = 184/273 (67%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 111606 ATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTG 111665 || ||| |||||||| ||| ||||| ||| | || |||||||| | ||| Sbjct 5935 ATCAAGGACAACCCAGAGGATCGCCGCATCATTGTATCGGCCTGGAACCCCGCGGATTTG 5876 Query 111666 GAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATG 111725 | ||| ||||| || || || ||||| | | ||||| || || || ||||| | Sbjct 5875 GGAAAGATGGCCCTGCCGCCGTGTCACATGTTTTGCCAATTCTACGTCGCAGACGGAGAG 5816 Query 111726 CTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATT 111785 || || || || ||||||||||| || || || || || | ||||| ||||| |||||| Sbjct 5815 CTCTCTTGTCAGATGTATCAGCGTTCCGCAGACATGGGGTTGGGTGTGCCGTTCAATATT 5756 Query 111786 GCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAA 111845 || ||||||||| | || |||| | ||||| | | ||| | || || Sbjct 5755 GCCTCTTACGCACTCTTGACACGCTTGGTAGCTCAAGTCTGTGGCTTGAAAGCCGGAGAG 5696 Query 111846 TTCATTCACGTTATCGGAGATGCGCATGTTTAC 111878 ||||||||| || || ||||| ||||| ||| Sbjct 5695 TTCATTCACACGATTGGGGATGCACATGTGTAC 5663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303239043364520