Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1319 199 4e-46 seq2149 129 6e-25 seq259 122 8e-23 seq802 118 1e-21 seq6464 89.7 5e-13 >seq1319 Length=24917 Score = 199 bits (220), Expect = 4e-46 Identities = 603/917 (66%), Gaps = 17/917 (2%) Strand=Plus/Plus Query 145630 CGACGCCAAATTACAAACTGCCGTCTCCTCGGCG-TCGCTGTATTGTACGATCTCGGCGC 145688 |||||||| || || || ||| ||| || ||| ||| ||||||| |||||||||| || Sbjct 9013 CGACGCCAGGTTGCAGACCGCCACCTCTTCCGCGCTCG-TGTATTGGACGATCTCGGTGC 9071 Query 145689 ACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGT 145748 ||| |||| | |||||||| |||| || || || || || ||| |||||| |||| Sbjct 9072 ACAGATTGGATGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCAGGTTGCAAGCGT 9131 Query 145749 CCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGGTG 145806 ||||||| |||||||| || ||| ||||| | ||||| |||| ||| |||| Sbjct 9132 CCTTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCCAAGATGGCAAAC--CA 9189 Query 145807 CAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAG 145866 ||||||||| |||||||| || || | ||||||||| ||||||||| || || Sbjct 9190 CAAGTCCTGAGCACGCACTGTCTTCTTGACTCGGCCCTCTCGTTCGTATTTTAAATATAG 9249 Query 145867 CTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAG 145926 ||| || || |||| ||| || | || ||||| |||| | ||||||||| || Sbjct 9250 GTCCCGGAAGGCCTGGCCGTGGCAGTCCGCGAGACCGGGGCACTGATCGGGACACATGAG 9309 Query 145927 CGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTA 145986 ||||| | | | | || | |||||| |||| || || | ||| || | || Sbjct 9310 GGACCAGGTCCTATCCTCCTCCACCCTCTCCATGAACAGGTCGGGAATCCATAGTCCATA 9369 Query 145987 CATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACT 146046 | | || || || ||||| || ||| | || | ||||| Sbjct 9370 GAAGAGATCCCGGGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGCAGGTCCAGCACTTC 9429 Query 146047 ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CC 146103 | ||||||||||||||||||| || | |||| ||| | ||| ||| | ||| || Sbjct 9430 AAAGATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCCCCTGGCCTCTTGCCTCC 9489 Query 146104 ACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCT 146163 ||||||||||||| || || || || ||||| | | ||||||| | | ||| | Sbjct 9490 CCCCTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGGCACCAGACCG-T 9548 Query 146164 GGCTACG--CCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTC 146221 ||| || || ||||| || || || |||| | | ||| | | || || Sbjct 9549 TGCT-CGTCCCCTTCGTGCCCTTAATGTAGGCGCCGTGCGCGCGGATGTTGTGGACCGAG 9607 Query 146222 ACGCCGA-GACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGAT 146280 | ||||| || |||||| |||| ||| ||||||| | ||||| |||||||| Sbjct 9608 AGGCCGATTCCCCCCGCCG-CCTTGCTTATCACGGCGCACTGCTTCAGCGTGTCGTAGAT 9666 Query 146281 GCCGTCAAT-GCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCG 146339 || | || | ||||| | ||| | || || ||||||||| ||||||||| | Sbjct 9667 ACCAACGATCGAGTCCGCTT-GCATGGCCAGGAGGAAGCACGAGGACATCTGCGGGAAAC 9725 Query 146340 GCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCC 146399 |||| ||||| ||| | || ||| ||||| | ||| || |||||| | | Sbjct 9726 GCGTGCCCGCGTGGAAAAGAGTAGGGGAGGCGTGGATGAACCACTTGTTGCTCATGAGCT 9785 Query 146400 GATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGA 146459 || || || | ||| | | | || || ||||| || || | || ||||||| | Sbjct 9786 CGTAGGTCTCCAAGGCGGCGGGCAGATCCTCTCCATGGATACCAAGGGCCACGCGCAGAA 9845 Query 146460 GCATGTGTTGGGGCCGCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCA 146519 |||||| || || |||||| |||| | | ||||| | ||| ||| | |||| Sbjct 9846 GCATGTACTGCGGGCGCTCCACCACCTTGCGCCCGATCTTCAGCAAGTAGGCTCGTTCCA 9905 Query 146520 GGGTTTTGTATCCGAAA 146536 ||||||| | |||||| Sbjct 9906 TGGTTTTGAAGCCGAAA 9922 >seq2149 Length=43014 Score = 129 bits (142), Expect = 6e-25 Identities = 742/1167 (64%), Gaps = 59/1167 (5%) Strand=Plus/Minus Query 145051 GTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGT 145110 ||||| || || ||| || ||||| |||||||| ||||| | |||| ||| || || Sbjct 34775 GTACTTGTTCACCACCGTGAATTCGCCCGCCAACACGCGACGGGAGTACATGTTCGATGT 34716 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 ||| || |||| ||||||||| ||||||||||| || || || | |||||| |||||| Sbjct 34715 GAAAGGCTCAACAGACTCGTTGTTGCCCAGGATCTGCGCAGTAGATGCGGTAGGCATGGG 34656 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTA----- 145225 || | ||||| ||| ||||| | ||||||| || | ||| | |||||| Sbjct 34655 TGCGAGCAATAGTGAGTTGCGGACACCGTGCTCCTGCA---CTT--TGAAGCGTAAACCG 34601 Query 145226 CCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCG 145285 |||| ||||| | | | || ||||| ||||||||||| | || || | ||||| | Sbjct 34600 GCCCAGTCCCAGCGAGTTGAGGGGGTCACGCCCCACATGTCGAATTGGAAGACGCCCTTG 34541 Query 145286 CTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAAC-T 145344 || |||| ||| |||| ||| ||| | | |||| ||| || | Sbjct 34540 CTCATGGGGGAGCCGGCGAAGGTCTCGTAGGGACCCTCCTTCATCGCGATCTC-CATCGA 34482 Query 145345 CGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTC 145404 |||||| | || ||||| || || |||||| ||| | | |||| ||| || || || Sbjct 34481 CGCCTCTACCGCCCCGAAGTACATGGTCTCGAAAATGTCCTTGTTAAGCTGCTGGGCCTC 34422 Query 145405 ATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCAC 145464 |||| | || | |||| | | || || || || | ||||| | || | Sbjct 34421 CGGAGACTCGAATGGGAATCGCATCTTGATGAAGGCGTCCGCCAAACCCTGCACGCCGAT 34362 Query 145465 GCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACG 145524 |||||||| || ||| |||||| ||| || ||||| ||| || || Sbjct 34361 CCCGATGGGGCGGTGTCGCATGTTCGAGCGCCTGGCTTCCTCGACAGGGTAGTAGTTGAT 34302 Query 145525 GTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAA 145584 |||||| | |||| |||||| || ||||| || || | || | | | Sbjct 34301 GTCGATGACGCGGTTCAGGTTTCGTGTCACCACCTTCGTGATTTCATACAGCCGCTGCAG 34242 Query 145585 GTC-AAACCGAGCCTCGT----CAAC--GACCACACAGCT--ATTGACGGCG-------- 145627 ||| || | || || | | || || | | | || ||| ||| Sbjct 34241 GTCGTAAGTGGGCGTCTTCCCGCTACCGGAGCCCTCCCCTTGGATGAATGCGGAAAGGTT 34182 Query 145628 -ATCGACGCCAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGG 145685 | || |||| || || || || ||| || |||| || |||| | | |||||| | Sbjct 34181 CACGGAGGCCAGGTTGCAGACCGCGACCTCATCGGGCGACG-TGTACTCGATGATCTCCG 34123 Query 145686 CGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACG 145745 ||||| |||| |||||||||| |||| || ||||| || |||| |||||| | Sbjct 34122 TGCACAGATTGGATGATTTGATGGTGCCCAAGTTCTGCTGGTTTGATTTCAGGTTGCAGG 34063 Query 145746 CGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT---AAAAC 145802 |||||||| | |||||||| || ||| ||||||||||| | |||| || || | Sbjct 34062 CGTCCTTGAACAGCATGTAAGGCGTGCCTGTCTCCACCTGGGAGTCCAGAATCGCGAACC 34003 Query 145803 GGTGCAAGTCCTGCGC---ACGCACCTGCTGC-TGGTAGCGGCCCTCTTCTTCGTATTTC 145858 | || | ||| || | |||| ||| || | | | |||||| ||||| | Sbjct 34002 AGAGC---TGCTGGGCCTTAATAACCT--TGCGTGCTTTC-CCACTCTTC-TCGTAGCTG 33950 Query 145859 CTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGA 145918 |||||||| | |||| | ||| | || | |||||| || |||| |||||| Sbjct 33949 GCGTAGAGCTGGTTAAACTCCTCGCCGCACACGTCCGCCAGGCCCGGGCACTCGTTGGGG 33890 Query 145919 CACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCAC 145978 || | || ||||| | |||| | | |||||| ||| |||| || ||| ||| Sbjct 33889 CAAAAAAGGGACCAGTCCCCGTCGCTCTCCACGCGCCGCATGAACAGGTCGGGCGTCCAG 33830 Query 145979 AGCGCGTACATCAAGT--CGCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTT---CA 146033 || ||||| | || | || || | | ||| ||| | || || || ||| || Sbjct 33829 AGGGCGTAGAACAGATCACGTGCACGCTCCAA--CTC-GTTGCCGTGGTT--CTTACGCA 33775 Query 146034 AATTAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTT 146093 | || | | ||||||| || ||||| || || | |||| ||||| || || | Sbjct 33774 GGTCCAGGAATTCAAAGATGTCTGCATGCCAGGGCTCTAGGTAGATGGCGAAGGAACCCT 33715 Query 146094 TTCGTTTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGG 146150 | || ||| || |||||||| |||| || || | | ||| || ||||| | ||| | Sbjct 33714 TGCGCTTGCCTCCGCCCTGGTCGACGTAGCGGGCCGTATCGTTGAAAACGCGGAGCATAG 33655 Query 146151 GCTCGACGCCGCTGGCTACGCCGTTCG 146177 | ||| |||| ||| |||||||| Sbjct 33654 GTACGATGCCGTTGGAGGTGCCGTTCG 33628 >seq259 Length=12200 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || ||||| ||||| || ||||||| ||| ||||| || ||||||||||| || | Sbjct 5802 CCGCCACGCAATCGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGAC 5743 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || || | || | |||||||| || || ||| Sbjct 5742 AACGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGGG 5683 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || |||||||| | | ||| | || || ||| ||| | | Sbjct 5682 ATACCCTCCTTGTCCTGAATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCACG 5623 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || || || || ||||| Sbjct 5622 TCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTAACAAAGATTTGCAT 5576 >seq802 Length=4370 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| ||||| |||| || || || | ||| ||||| || ||||||||||| || | Sbjct 260 CCACCACGCAAGCGCAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 319 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || |||||||| |||||| | |||| |||||||| || || || Sbjct 320 AGCGTGCGTCCGTCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGA 379 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | | || | |||||| ||| ||||| Sbjct 380 ATGCCCTCCTTGTCTTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACA 439 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || || || ||||| ||||||||| Sbjct 440 TCCAATGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 487 >seq6464 Length=44462 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| ||||||||||| || | || | |||||||| || || ||||| || || ||| Sbjct 38433 TCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGGATCCCCTCCTTG 38492 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | | ||| | || ||| ||| ||| | ||| | |||| | Sbjct 38493 TCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACGTCCAAAGTAATG 38552 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || || || || || || || |||||||| |||||| || Sbjct 38553 GTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCATGGCT 38591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471972324902400