Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq2348 675 0.0 >seq2348 Length=90098 Score = 675 bits (748), Expect = 0.0 Identities = 724/954 (76%), Gaps = 6/954 (1%) Strand=Plus/Plus Query 166081 AACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACC 166140 |||||| | || | |||||||| || | ||||| || || | || |||| || Sbjct 63551 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 63610 Query 166141 ATCTGTTTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGAG 166200 | ||| |||||| |||||||| | || |||||||| || ||||||||||| |||||||| Sbjct 63611 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 63670 Query 166201 CCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCCTCC 166260 || || || || || || | || || |||||||| ||| | ||||| ||| | || Sbjct 63671 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 63730 Query 166261 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATGG 166320 || ||||| |||||| |||||||||| || | |||||||| || || | || |||||| Sbjct 63731 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 63790 Query 166321 CTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGCC 166380 ||||| ||||||||||||| ||| || ||||| || |||||| | | || | | | Sbjct 63791 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGC 63850 Query 166381 TACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTA 166440 |||||||| |||||||||||| | ||||| | || |||||||||||||||| |||| Sbjct 63851 TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTA 63910 Query 166441 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 166500 || | ||| || || || || |||||| ||||| ||| | | || || |||| ||| Sbjct 63911 GCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAA 63970 Query 166501 GGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTC 166560 ||| |||||||| | ||||| | |||||| ||| || ||||||| |||| | || Sbjct 63971 GGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTA 64030 Query 166561 TTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTA 166620 ||||||||||| |||||||| || |||||||| ||||||||| ||||| || ||||| Sbjct 64031 TTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTG 64090 Query 166621 TTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCGTCCGT 166680 || ||||| || | ||| |||||||| || ||| || || || | ||||| Sbjct 64091 TTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGTAACATCTAGTTTAATCCGT 64150 Query 166681 GAGACCACTGAA-AC--TGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAG 166737 || |||||| || || ||| ||||| |||||||| ||||| ||||||||||| Sbjct 64151 GA---AACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAA 64207 Query 166738 ACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCC 166797 || ||||||||||| ||||| || |||||||| || || | |||||||||||||| Sbjct 64208 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGT 64267 Query 166798 TTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGG 166857 ||||||||||| || | | ||||||||| | || || ||||| ||||| ||||||||| Sbjct 64268 TTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 64327 Query 166858 TTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAG 166917 || ||||||||||| ||||||| |||||||||||| | ||||| |||||||||||||| Sbjct 64328 TTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACCAA 64387 Query 166918 TCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCT 166977 || | | ||| | || ||||||||| ||||||||||||| || | ||||||||||| Sbjct 64388 TCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCT 64447 Query 166978 GGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGAT 167031 | | | |||||||||||||||||||| ||||| || |||||||||||||| ||| Sbjct 64448 GATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 64501 Score = 562 bits (622), Expect = 3e-155 Identities = 741/1017 (73%), Gaps = 8/1017 (1%) Strand=Plus/Minus Query 167312 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTT 167371 ||||||||| | ||||| || || || || ||| | || ||||| || | | | ||| Sbjct 5087 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 5028 Query 167372 CCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGTTACGAGCTGG 167431 || || || | ||| ||| ||||||| ||| | || || || || |||||||| ||| Sbjct 5027 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 4968 Query 167432 TATACCCACGGGTTGGCGTCTAGTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGCAGT 167490 || || || || || || ||| |||| | ||||| ||| | || | | || | ||| || Sbjct 4967 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAACTTCT-TAACTGTAGCTGT 4909 Query 167491 GTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 167550 ||||| ||||| | |||||||||||| | | || | ||||| || ||| | || Sbjct 4908 ATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACA 4849 Query 167551 GGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGG 167610 || ||||| | | ||| || | || ||| | ||| ||||||| || | || || Sbjct 4848 AGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGG 4789 Query 167611 AGCCTTTGCTCTCATAGGATTTATGCTT-CGGCAATTTGAGATAAGTAGACTAGTAGGTA 167669 || |||| | || ||||| || || || |||||||| || | | || ||||||| Sbjct 4788 GGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTA 4730 Query 167670 TCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTC 167729 | ||||| || ||||| ||||| ||||| || || || || || || || ||||| || Sbjct 4729 TTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCT 4670 Query 167730 TCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGA 167789 | ||||||||| | ||||| | |||||||||||||| || ||||| |||||||| | Sbjct 4669 TAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTA 4610 Query 167790 TATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATA 167849 | || |||||||| ||||| |||| ||||||||||||||||| || || || ||||| | Sbjct 4609 TTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACA 4550 Query 167850 TGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAG 167909 ||||||| || || || || |||| |||||| | | |||||||| ||||| | ||| | Sbjct 4549 TGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTG 4490 Query 167910 TAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATA-CG 167968 |||| || || | | ||||||||||| || || || ||| || ||| | | | Sbjct 4489 TAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGC-TTTCACACCA 4431 Query 167969 ACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTT 168028 || || ||| ||||||||||| ||||| || || ||| |||||||||| ||||||||| Sbjct 4430 ACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCACAAATTTTT 4371 Query 168029 GGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATG 168088 ||| ||||||| || || |||||| | || ||||| ||| | || ||||| || | Sbjct 4370 GGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACA 4311 Query 168089 GGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTT-CGTGCTTATGA 168147 || | |||||||||||| ||||||| | ||| | ||| |||| ||| | || ||||| Sbjct 4310 GGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCA-TTAAACTTAAGAGCATATGA 4252 Query 168148 CTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAA 168207 |||||| ||||| || || | ||||| || |||||||| ||||||||||||||||| || Sbjct 4251 CTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAA 4192 Query 168208 AAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACATGA 168267 ||| ||| | | || ||||| | | | |||||||| || |||||||||||||| Sbjct 4191 AAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGA 4132 Query 168268 AAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCTGTGATATAATAA 168324 ||| |||||||||||||| || || || ||| | || ||||| || | ||| | ||| Sbjct 4131 AAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATAGAGTAA 4075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567183359856000