Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3418 95.1 2e-14 seq2149 86.0 1e-11 >seq3418 Length=26553 Score = 95.1 bits (104), Expect = 2e-14 Identities = 207/308 (67%), Gaps = 4/308 (1%) Strand=Plus/Plus Query 218520 CTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAG 218579 |||| || || |||||||||| || ||||| | || |||| || || ||| Sbjct 16196 CTTCGTCAACCAGGAGCTCATCCTCTTCTCCATGGCGGACAACCAGCGCTCCATCCCCCA 16255 Query 218580 CGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAA 218639 | || ||||||| || ||||| | ||||| || | ||||||||| || || ||||| Sbjct 16256 CCTGATGGATGGGCTGAAGCCGGCCCAGCGGAAAGTTCTCTTTGCCTGCTTTAAACGGAA 16315 Query 218640 CCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTA 218699 ||| |||| ||||||||||| ||| | |||| || || ||||| || | ||| Sbjct 16316 CCTCAAGAAAGAGATTAAGGTCGCCCAGCTGGCTGGCTACGTCTCCGAGCACTCGGCCTA 16375 Query 218700 CCATCACGGTGAGCAGAGTC--TGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757 ||||||||| ||| | || || | || | || || || ||||| || | | ||| Sbjct 16376 CCATCACGGCGAG--GCCTCCTTGAACGGGACGATCGTGGGAATGGCCCAAAATTTCGTG 16433 Query 218758 GGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGT 218817 ||| |||||||| || || ||| | ||| ||||| || | || | |||| Sbjct 16434 GGCTCCAACAACATTGGTTTCCTCTACCCGAGCGGGCAGTTCGGCACGCGGATCATGGGG 16493 Query 218818 GGAAAGGA 218825 || ||||| Sbjct 16494 GGGAAGGA 16501 >seq2149 Length=43014 Score = 86.0 bits (94), Expect = 1e-11 Identities = 263/404 (65%), Gaps = 7/404 (2%) Strand=Plus/Minus Query 294102 CTCATACTTGGTGTAAAGCTCTTCGTATTCCTTGCCATATACATCAGACAGGCCAGGGCA 294161 ||| || ||| ||| |||| | | |||| ||| | || || | |||||| ||||| Sbjct 33959 CTCGTAGCTGGCGTAGAGCTGGTTAAACTCCTCGCCGCACACGTCCGCCAGGCCCGGGCA 33900 Query 294162 CTCGTGAGGGTCAAGTAGAGACCACTGGGCATCAGTCTCCACGCGCTTCATGAATAGATC 294221 ||||| ||| || || ||||| | | || ||||||||||| |||||| || || Sbjct 33899 CTCGTTGGGGCAAAAAAGGGACCAGTCCCCGTCGCTCTCCACGCGCCGCATGAACAGGTC 33840 Query 294222 ATTGACCCACATTGCGTAAAACAAGTTGCGGGCGCGCAGGCTCTCCTCACCTTGATTACG 294281 ||| | ||||| |||| | || || ||| ||| | || || || Sbjct 33839 GGGCGTCCAGAGGGCGTAGAACAGATCACGTGCACGCTCCAACTCGTTGCCGTGGTTCTT 33780 Query 294282 ACGGAGGAGCAGGAAGTCCATGATGTCGGGATGATGGGGTTCCAGATACACAGCAAAGGA 294341 ||| ||| |||||| || | |||||| | ||| ||| || || || | || ||||| Sbjct 33779 ACGCAGGTCCAGGAATTCAAAGATGTCTGCATGCCAGGGCTCTAGGTAGATGGCGAAGGA 33720 Query 294342 CCCCTT---CCTGCGTCCCCCCTGGTTGGCGTAGGCAGATGTGGTGTCAAACACCTTCAG 294398 ||||| | ||| ||| ||||||| | ||||| | || || || || || Sbjct 33719 ACCCTTGCGCTTGCCTCCGCCCTGGTCGACGTAGCGGGCCGTATCGTTGAAAACGCGGAG 33660 Query 294399 CATAGGCACGATGCCATCGGACTCACCATTGGTTCCGCGAATCT--CAGCCCCGCGCCCG 294456 |||||| |||||||| | ||| || || | ||| ||||| | || | |||||| Sbjct 33659 CATAGGTACGATGCCGTTGGAGGTGCCGTTCGATCCACGAATGTAGGAGTCTCGCGCC-- 33602 Query 294457 CGAATGTCGCTCATGTGGAGACCAATGCCACCGCCATACTTGGA 294500 ||||||| | ||| | ||||| ||||| || | ||||| Sbjct 33601 CGAATGTTGTGGATGGATACGCCAATCCCACCCGCAAATTTGGA 33558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027746459569260