Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq802 170 4e-37 seq6464 122 2e-22 seq642 116 7e-21 seq2321 93.3 8e-14 >seq802 Length=4370 Score = 170 bits (188), Expect = 4e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || | |||||| |||||||| | || |||||||| || ||||| || || || Sbjct 260 CCACCACGCAAGCGCAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 319 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| || || | || || ||||| ||| Sbjct 320 AGCGTGCGTCCGTCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGA 379 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||||||||||||| ||| || |||||||| || ||| | || || Sbjct 380 ATGCCCTCCTTGTCTTGAATCTTTTGCTTCACATTTTCGATGGTATC-GCTGGGCTCGAC 438 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || ||||| |||||||||||||| |||||||| Sbjct 439 ATCCAATGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 486 >seq6464 Length=44462 Score = 122 bits (134), Expect = 2e-22 Identities = 130/169 (77%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||||||||||||||| || | |||||| ||||| || ||||| | || || || || || Sbjct 38420 GAGTGTCCTCCCATCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGG 38479 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTA 68412 || || |||||||| || |||||| ||| || ||| |||||||| ||| | || | Sbjct 38480 GATCCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCAATGGTGTC-GCTGGGCTCCA 38538 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||| || ||||| || ||||| |||||||| ||||| || ||||| Sbjct 38539 CGTCCAAAGTAATGGTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCAT 38587 >seq642 Length=66651 Score = 116 bits (128), Expect = 7e-21 Identities = 171/239 (72%), Gaps = 5/239 (2%) Strand=Plus/Minus Query 173038 CAAGTTCGTCAAGGGAGATATTCAATCTACTGATCTCCTGGCGCACGTCCT-GAAGCAGG 173096 |||||| |||||||| | || || |||| ||| || |||| || |||| ||| Sbjct 22262 CAAGTTTGTCAAGGGCAACATCTGTTCCTCTGACCTCGTGAACTACGTACTTGAAG-AGG 22204 Query 173097 AAAAAATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGGACAACTCGTTCGGTA 173156 || | ||||||||||| ||||||||||| || |||||||| ||||||||| ||||| | Sbjct 22203 AAGAGATTGACACGATCATGCACTTTGCGGCCCAGACCCACGTGGACAACAGCTTCGGCA 22144 Query 173157 ACTCGCTGGCATTTACCATGAACAACGTCTACGGGACCCACGTTCTCCTGGAATGCGCGA 173216 |||| | | || || ||||||| | ||||| ||||| ||| |||| |||||| Sbjct 22143 ACTCCTTCTCCTTCACGCAGAACAACATTCTGGGGACGCACGTCCTCTTGGAGAGCGCGA 22084 Query 173217 GGCTCTATGGCGGTGTCCAGCGGTTCATCAATGTGTCTACCGACGAAGTATACGGCGAG 173275 || | | || |||| || ||| | ||||| || |||||||| ||||| ||| Sbjct 22083 AAGTCCA---CAACATCAAGCGCTTTATCCACGTGTCCACGGACGAAGTGTACGGGGAG 22028 >seq2321 Length=32888 Score = 93.3 bits (102), Expect = 8e-14 Identities = 133/187 (71%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 173088 TGAAGCAGGAAAAAATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGGACAACT 173147 || || ||||| ||||||||||||| ||||| | || ||||||||||||||||||||| Sbjct 27456 TGGAGGAGGAAGAAATTGACACGATCGTGCACCTGGCGGCGCAGACCCATGTGGACAACA 27515 Query 173148 CGTTCGGTAACTCGCTGGCATTTACCATGAACAACGTCTACGGGACCCACGTTCTCCTGG 173207 || || ||||| | | ||||| ||||||| | | || || ||||| || ||| Sbjct 27516 GCTTTGGCAACTCCTTCTCTTTTACGCAGAACAACATTTTAGGTACGCACGTGCTTTTGG 27575 Query 173208 AATGCGCGAGGCTCTATGGCGGTGTCCAGCGGTTCATCAATGTGTCTACCGACGAAGTAT 173267 | | || | | ||||| ||| ||||||| | | || || || ||||| || | Sbjct 27576 AGAGTGCCAAAGTGCATGGC---ATCCGGCGGTTCGTGCACGTCTCCACTGACGAGGTGT 27632 Query 173268 ACGGCGA 173274 |||| || Sbjct 27633 ACGGGGA 27639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921543370879200