Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2149 168 8e-37 seq441 125 9e-24 seq4979 107 2e-18 seq3418 96.9 4e-15 >seq2149 Length=43014 Score = 168 bits (186), Expect = 8e-37 Identities = 584/902 (65%), Gaps = 23/902 (3%) Strand=Plus/Minus Query 114512 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 114571 |||||||| || || ||||| |||| ||| || || |||||||||||||||| || Sbjct 34141 GTGTACTCGATGATCTCCGTGCACAGATTGGATGATTTGATGGTGCCCAAGTTCTGCTGG 34082 Query 114572 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 114631 ||||| || ||| || || |||||| | |||||||| ||||| || |||||| ||| Sbjct 34081 TTTGATTTCAGGTTGCAGGCGTCCTTGAACAGCATGTAAGGCGTGCCTGTCTCCACCTGG 34022 Query 114632 GACTTGAGAATAGCCTTCCAGACATCGGCGGCTGG--CACAGTGGCGTTG---GCTCGCC 114686 || | ||||| || ||||| || ||||| | | | | ||| ||| || Sbjct 34021 GAGTCCAGAATCGCGAACCAGA-----GCTGCTGGGCCTTAATAACCTTGCGTGCTTTCC 33967 Query 114687 CCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACC-CACGGCCTCTGAGAGC 114745 | || |||||| | | |||||| | |||||| || || ||| | || | || Sbjct 33966 CACTCTTCTCGTAGCTGGCGTAGAGCTGGTTAAACTCCTCGCCGCAC-ACGTCCGCCAGG 33908 Query 114746 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATG 114805 || || || | ||||| || || ||||| | || | ||| || ||| |||| Sbjct 33907 CCCGGGCACTCGTTGGGGCAAAAAAGGGACCAGTCCCCGTCGCTCTCCACGCGCCGCATG 33848 Query 114806 AAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTC--TTCATCCC 114863 || ||||| || ||||||| || |||| ||||| || || ||| | || | | Sbjct 33847 AACAGGTCGGGCGTCCAGAGGGCGTAGAACAGATCACG--TGCACGCTCCAACTCGTTGC 33790 Query 114864 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 114923 | || || ||||| |||| || || | ||| || || ||||| || || ||||| | Sbjct 33789 CGTGGTTCTTACGCAGGTCCAGGAATTCAAAGATGTCTGCATGCCAGGGCTCTAGGTAGA 33730 Query 114924 CCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAA 114980 |||| || ||||| || | || |||||| || || | || || | || | Sbjct 33729 TGGCGAAGGAACCCTTGCGCTTGCCTCCGCCCTGGTCGACGTAGCGGGCCGTATCGTTGA 33670 Query 114981 ATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGA 115038 | ||||| ||||| || | ||| || | || ||| || | || |||| || ||| Sbjct 33669 AAACGCGGAGCATAGGTACGATGCCGTTGGAGGTGCCGTTCGATCCACGAATGTAGGAGT 33610 Query 115039 CTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 115098 || || | | | |||||| | ||||| || || || | || || || Sbjct 33609 CT--CGCGCCCGAATGTTGTGGATGGATACGCCAATCCCACCCGCAAATTTGGAAATGGC 33552 Query 115099 CGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAG 115158 ||||| | | |||| || ||||||| |||||||| ||||| |||| | | | || Sbjct 33551 AGCGCATTGCTTGAGGGTGTCGTAGATGCCGTCGATGGAGTCCTCCTTCATGGTCAGGAG 33492 Query 115159 GAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTG 115218 ||||||| || | ||| |||| ||||| || || ||||| || || || || || || Sbjct 33491 GAAGCAGGAGGAGAGTTGGGGCCGCGGTGTGCCGGCATTGAAAAGTGTAGGCGTAGCATG 33432 Query 115219 GATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCC 115278 |||| | | ||||| || ||||||||||| | ||| ||||| || Sbjct 33431 CGTGAAAAGTTTGAGCGACATGAGATTGTAGGTCTCCAGCGCCGCGTCAATGTTCTCTTT 33372 Query 115279 GTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATC 115338 ||| ||||| || | || ||||| | ||||| ||||| ||||| | | || | Sbjct 33371 GTGGATACCAATTGCCACACGCATGATCATGTGCTGGGGGCGCTCCATAACTACCCCGTT 33312 Query 115339 GAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAACCAAAGTCATAGTC 115398 | | | | ||||| ||| |||| || || | ||||| || || | ||| |||| Sbjct 33311 CATCTTAAGAAGGTACGACTTTTCCAGCGTTTTAAAGCCAAAGTAGTCATAATCAAAGTC 33252 Query 115399 CC 115400 || Sbjct 33251 CC 33250 >seq441 Length=67861 Score = 125 bits (138), Expect = 9e-24 Identities = 255/375 (68%), Gaps = 18/375 (5%) Strand=Plus/Minus Query 10786 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 10845 |||||| ||||| || |||||||| | ||| | ||| | || || || || || || Sbjct 41009 ACGATCGAAGCGGCCCGGGCGGAGCAAGGCCTGGTCCAAGACGTCTGCACGATTGGTGGC 40950 Query 10846 CGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATT 10905 |||||||| | ||| || | | | || ||||| |||||||| |||| || || || Sbjct 40949 GGCGATGACGATGATCCCAGGGTTGCCCTCGAAGCCGTCCATCTCGGTCAGCAGCTGGTT 40890 Query 10906 GATGGTTTGTTCGCGTTCATCATTCGCG--GGCATACCACCCGCACTGCGTTGCTTACCG 10963 | ||| || || || || || ||| | |||| | | |||| | ||| || || Sbjct 40889 CAGGGTCTGCTCCCGCTCGTCGTTCCCTCCGGCAAAGC--CCGCCCCGCGCTGACGGCCC 40832 Query 10964 ACGGCGTCAATTTCATCGATGAAAACGATACACGG----TTGATTTTCACGGGCAACTTC 11019 ||||| ||||| || ||||| |||| ||| || || || | ||| | | ||| Sbjct 40831 ACGGCATCAATCTCGTCGATAAAAATGATGCATGGCGCGTTCTTCTTCGCCTG----TTC 40776 Query 11020 AAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAAT---TGGC 11076 || ||||| || || | | |||||| || ||||||||||| || ||||| | | | Sbjct 40775 GAACATATCGCGCACACGCGAGGCACCCACCCCCACAAACATCTCAACAAACTCCGAGCC 40716 Query 11077 GGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 11136 ||||| | ||||||||| ||| || || ||||||| |||| || || || || Sbjct 40715 GGCGGCCGA---GATGAAGGGCACGCCCGACTCCCCCGCGACGGCTTTAGCCAGCAGTGT 40659 Query 11137 CTTCCCCGTCCCAGG 11151 ||| |||||||| || Sbjct 40658 CTTACCCGTCCCGGG 40644 >seq4979 Length=17524 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| || ||||||||||||||||||||||||| || || || || ||||| ||||| Sbjct 9949 GGCATCAGGCCCCGCTTCTTCAACCAGAAAATCGAGCAGAAGGAGCCGGAGAAAAAGATG 10008 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCG-ACTTTGTGTCAAA 126225 |||||||| || || || | | ||||| ||||| || |||| |||| ||| | Sbjct 10009 CCCTCCACGGCTGCAAAGGCGATCAAGCGCTCGGCAAAAGA-CGCGTACTTGCGGTCGCA 10067 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 126285 |||| | |||||| ||||||| || ||| |||||||||| || || | || Sbjct 10068 CCACCGGAGCGCCCAACGCGCCTTGCGTCGGACACAAGGGACGGTCTCAATGGCGTTTAA 10127 Query 126286 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTA 126318 ||| | | || || ||||| | |||||||| Sbjct 10128 GAGCTTGTGTTTCTCGGATGGGTTCTTGATGTA 10160 >seq3418 Length=26553 Score = 96.9 bits (106), Expect = 4e-15 Identities = 181/266 (68%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 171904 CGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGAT 171963 ||| || || || ||||||| ||||| || || || || | ||| | |||| | || Sbjct 16505 CGCGTCCTTCCCCCCCATGATCCGCGTGCCGAACTGCCCGCTCGGGTAGAGGAAACCAAT 16446 Query 171964 ATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTC 172023 ||||| || |||| | | | | ||||| || ||||| | | |||| | || Sbjct 16445 GTTGTTGGAGCCCACGAAATTTTGGGCCATTCCCACGATCGTCCCGTTCAAGGAGGCCTC 16386 Query 172024 ACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTC 172083 ||||||||||||||||| | || | ||| || | |||| ||| || ||||| ||||| Sbjct 16385 GCCGTGATGGTAGGCCGAGTGCTCGGAGACGTAGCCAGCCAGCTGGGCGACCTTAATCTC 16326 Query 172084 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCC 172143 | |||||||||| | ||||| ||| | | || || | ||| | ||||| || || Sbjct 16325 TTTCTTGAGGTTCCGTTTAAAGCAGGCAAAGAGAACTTTCCGCTGGGCCGGCTTCAGCCC 16266 Query 172144 GTCGGCCATGTGCGCGATGGAACGCT 172169 || || ||| | |||||| |||| Sbjct 16265 ATCCATCAGGTGGGGGATGGAGCGCT 16240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597302376928800