Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2149 529 2e-145 seq1319 212 6e-50 >seq2149 Length=43014 Score = 529 bits (586), Expect = 2e-145 Identities = 1249/1869 (67%), Gaps = 50/1869 (3%) Strand=Plus/Plus Query 93716 ATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCA 93775 |||| || ||||||| ||| ||||| ||||| ||||||||||| || |||||| | || Sbjct 33259 ATTATGACTACTTTGGCTTTAAAACGCTGGAAAAGTCGTACCTTCTTAAGATGAACGGGG 33318 Query 93776 GGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACG 93835 ||| ||||| || || || || | ||||| || || || || || ||| | Sbjct 33319 TAGTTATGGAGCGCCCCCAGCACATGATCATGCGTGTGGCAATTGGTATCCACAAAGAGA 33378 Query 93836 ACAT-GCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATAC-CATGGC 93893 |||| | || | || | | | || |||| | ||| | || |||| | Sbjct 33379 ACATTGACGCG-GCGCTGGAGACCTACAATCTCATGTCGCTCAAACTTTTCACGCATG-C 33436 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953 || || || || ||||| || || || ||| ||| || | || || || ||||| | Sbjct 33437 TACGCCTACACTTTTCAATGCCGGCACACCGCGGCCCCAACTCTCCTCCTGCTTCCTCCT 33496 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||||||||| ||| || | ||||| ||||||| | || || |||| Sbjct 33497 GACCATGAAGGAGGACTCCATCGACGGCATCTACGACACCCTCAAGCAATGCGCTGCCAT 33556 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 || |||| ||||| || || || | ||||| || | || || | | ||||| Sbjct 33557 TTCCAAATTTGCGGGTGGGATTGGCGTATCCATCCACAACATTCGGGCGCGAGACTCCTA 33616 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 ||| || || | || ||||||||||||||| |||| ||||||||||| || |||||| | Sbjct 33617 CATTCGTGGATCGAACGGCACCTCCAACGGCATCGTACCTATGCTCCGCGTTTTCAACGA 33676 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 |||| |||||||| |||||||| || || | | | |||||||| ||||| |||| || Sbjct 33677 TACGGCCCGCTACGTCGACCAGGGCGGAGGCAAGCGCAAGGGTTCCTTCGCCATCTACCT 33736 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 ||||||||||| || ||| | | ||| | |||||||| ||||||||||||||||| Sbjct 33737 AGAGCCCTGGCATGCAGACATCTTTGAATTCCTGGACCTGCGTAAGAACCACGGCAACGA 33796 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 ||||| | || | || || |||||||| |||||| ||| ||||| || ||| || Sbjct 33797 GTTGGAGCGTGCACGTGATCTGTTCTACGCCCTCTGGACGCCCGACCTGTTCATGCGGCG 33856 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 ||| |||| || | |||| |||||||| ||||| || || || || ||| | || Sbjct 33857 CGTGGAGAGCGACGGGGACTGGTCCCTTTTTTGCCCCAACGAGTGCCCGGGCCTGGCGGA 33916 Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433 ||| || || | ||| | | | || || | ||||| | || || || | Sbjct 33917 CGTGTGCGGCGAGGAGTTTAACCAGCTCTACGCCAGCTACGAGAAGAGTGGGAAAGCACG 33976 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 |||||||| | || | |||| ||| ||| ||||| ||||||||||| || Sbjct 33977 CAAGGTTATTAAGGCCCAGCAGCTCTGGTTCGCGATTCTGGACTCCCAGGTGGAGACAGG 34036 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 ||||| ||||| ||||||||||| | |||| || || ||||||||| || | || Sbjct 34037 CACGCCTTACATGCTGTTCAAGGACGCCTGCAACCTGAAATCAAACCAGCAGAACTTGGG 34096 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 ||||| || ||||||||||| ||||| ||||||| || || || || ||| | Sbjct 34097 CACCATCAAATCATCCAATCTGTGCACGGAGATCATCGAGTACACGTCGCCCGATGAGGT 34156 Query 94614 TGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGC---GAGATGCCT---- 94666 || || || ||||||| |||| | ||||| ||| | ||| | | | || | || Sbjct 34157 CGCGGTCTGCAACCTGGCCTCCGTGAACCTTTCCGCATTCATCCAAGGGGAGGGCTCCGG 34216 Query 94667 --ACACGTCTACTGCTTCGTTCGATCTGGAGGAGCT-TGTGAACTTCGCGGGAAGGATGG 94723 | | || | | | ||| ||| || ||| | |||| | | ||||| ||| Sbjct 34217 TAGCGGGAAGACGCCCACTTACGACCTGCAGCGGCTGTATGAAAT---CACGAAGG-TGG 34272 Query 94724 T--CTTG-AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGA 94780 | | | ||||||||| | || ||||||| |||| |||||| ||| ||| || | Sbjct 34273 TGACACGAAACCTGAACCGCGTCATCGACATCAACTACTACCCTGTCGAGGAAGCCAGGC 34332 Query 94781 ACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGG 94840 ||| ||| || || || |||||||| |||||||| |||||||| |||||||| | Sbjct 34333 GCTCGAACATGCGACACCGCCCCATCGGGATCGGCGTGCAGGGTTTGGCGGACGCCTTCA 34392 Query 94841 TGATGATGCGTCTGCCCTACGA--CTCTGTCGACGCGGCGGGTTTGAATTTGAACATATT 94898 | | |||||| | || | ||| ||| | | | | || | || || | |||| || Sbjct 34393 TCAAGATGCGATTCCCATTCGAGTCTCCGGAGGCCCAGCAGCTT--AACAAGGACATTTT 34450 Query 94899 CGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCG----GACG 94954 ||| | ||| || | |||||| | | |||| | ||| |||||| || | Sbjct 34451 CGAGACCATGTACTTCGGGGCGGT----AGAGGCGTCGA--TGG--AGATCGCGATGAAG 34502 Query 94955 GCGGG-CCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGAC 95013 | ||| || |||| | ||| ||| || ||| || ||||| | || || |||||| Sbjct 34503 GAGGGTCCCTACGAGACCTTCGCCGGCTCCCCCATGAGCAAGGGCGTCTTCCAATTCGAC 34562 Query 95014 CTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATC 95073 | ||||| |||| ||||| || | ||||||| | | ||||| | || Sbjct 34563 ATGTGGGGCGTGACCCCCTCAACTCGCTGGGACTGGGCCGGTTTACGCTTCAAAGTGCAG 34622 Query 95074 AAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAG 95133 | |||||||| ||| | || | | || |||||||| || || || || |||||| Sbjct 34623 GAGCACGGTGTCCGCAACTCACTATTGCTCGCACCCATGCCTACCGCATCTACTGCGCAG 34682 Query 95134 ATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTG 95193 ||||| |||||||||||||| | || || ||||| || ||| ||||| | | || ||| Sbjct 34683 ATCCTGGGCAACAACGAGTCTGTTGAGCCTTTCACATCGAACATGTACTCCCGTCGCGTG 34742 Query 95194 CTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGA-CGTCTCTGGG 95252 | || || |||||| | || | |||||| |||| || || ||||| | || | | || Sbjct 34743 TTGGCGGGCGAATTCACGGTGGTGAACAAGTACCTGCTCCGCGACCTCATCGAC-CAAGG 34801 Query 95253 TGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACAT 95312 ||||| | | ||| || ||| | | || || ||||| |||||||| | Sbjct 34802 CCTGTGGACTTCTGAAGTCCGAAATCAAATTATGGGCAACAGGGGCTCAGTCCAGAATGT 34861 Query 95313 --CCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGC-- 95368 || || || || ||| |||||| || |||||||| ||||||||||||| || Sbjct 34862 GGCCAGC--ATCCCTCGGGAGCTCAAGGACCTGTACAAGACAGTGTGGGAGATCCGGCAG 34919 Query 95369 -AGCGCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNN 95427 || |||||| ||||||| || |||| |||||| ||| |||||| ||| Sbjct 34920 AAGTGCGTGA---TCGACCAGGCCGCCGACCGCGGCGCCTACATCTGTCAGTCGCAGTCT 34976 Query 95428 NNNNNNNNNNNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGG 95487 ||||| | || | | | | | | || |||||| ||||| Sbjct 34977 CTCAATATCCATTTGGCCAATCCGACGCCTGCACAGCTCACCTCCATGCACTTCTATTCC 35036 Query 95488 TGGAGAAAGGGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCC 95547 |||| ||||| ||||||||||| ||||| || | || ||| |||| |||||||| || Sbjct 35037 TGGAAGAAGGGGCTCAAGACCGGCATGTACTACCTACGGACCCGGCCCAAGGCGGATGCC 35096 Query 95548 ATACAGTTC 95556 ||||||||| Sbjct 35097 ATACAGTTC 35105 >seq1319 Length=24917 Score = 212 bits (234), Expect = 6e-50 Identities = 602/915 (66%), Gaps = 10/915 (1%) Strand=Plus/Minus Query 93721 GATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTT 93780 || || || | ||||||||| |||| | ||| | || ||||| | ||| ||| Sbjct 9927 GACTATTTCGGCTTCAAAACCATGGAACGAGCCTACTTGCTGAAGATCGGGCGCAAGGTG 9868 Query 93781 TCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATG 93840 ||||| ||||| | |||| ||||||| ||| | || || || || | || || Sbjct 9867 GTGGAGCGCCCGCAGTACATGCTTCTGCGCGTGGCCCTTGGTATCCATGGAGAGGATCTG 9808 Query 93841 CCGAATGTTTTGCGGGCTTTCAGAGA-CATGCGGGACAAGAGGTATACCATGGCCACCCC 93899 || | ||| | | | | ||| |||| | ||||| ||| | | ||| |||| Sbjct 9807 CCCGCCGCCTTGGAGACCTAC-GAGCTCATGAGCAACAAGTGGTTCATCCACGCCTCCCC 9749 Query 93900 GACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAA 93959 || || ||| ||||||| || | | || |||||||| ||||| ||||| || | | Sbjct 9748 TACTCTTTTCCACGCGGGCACGCGTTTCCCGCAGATGTCCTCGTGCTTCCTCCTGGCCAT 9689 Query 93960 CAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAA- 94018 | || ||||| ||| || || | ||||| || ||| | ||||| || | || Sbjct 9688 GCAAGCGGACTCGATCGTTGGTATCTACGACACGCTGAAGCA--GTGCG-CCGTGATAAG 9632 Query 94019 -AATACG-CGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACAT 94076 || || ||||||||||||| || |||||| || | || || || ||||||| Sbjct 9631 CAAGGCGGCGGGGGGAATCGGCCTCTCGGTCCACAACATCCGCGCGCACGGCGCCTACAT 9572 Query 94077 CCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGC 94136 || || || || || |||||| || || || |||||| |||||||| || | | Sbjct 9571 TAAGGGCACGAAGGGGACGAGCAACGGTCTGGTGCCCATGCTCAGGGTCTTCGACGTCAC 9512 Query 94137 GGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGA-AGGGTTCTTTCGCGGTCTATCTCG 94195 ||||||||||||||||||||| || || | |||| |||| |||| || |||| || | Sbjct 9511 GGCGCGCTACGTGGACCAGGGGGGAGGCAAGAGGCCAGGGGCCTTT-GCCATCTACCTGG 9453 Query 94196 AGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATC 94255 |||| |||||||||||| | | | | |||||||| ||||||||||| || || Sbjct 9452 AGCCGTGGCACGCGGACATCTTTGAAGTGCTGGACCTGCGGAAGAACCACGGAAAGGAGG 9393 Query 94256 TGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCG 94315 || | ||||| | || |||||||| | || ||| | || ||||| || ||| | | | Sbjct 9392 AGGCGCGGGCCCGGGATCTCTTCTATGGACTATGGATTCCCGACCTGTTCATGGAGAGGG 9333 Query 94316 TCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACG 94375 | ||| | | ||||| || | |||||| || | || ||||| || | ||| Sbjct 9332 TGGAGGAGGATAGGACCTGGTCCCTCATGTGTCCCGATCAGTGCCCCGGTCTCGCGGACT 9273 Query 94376 TTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGA 94435 || | || ||| | ||| |||||| ||||| | || || Sbjct 9272 GCCACGGCCAGGCCTTCCGGGACCTATATTTAAAATACGAACGAGAGGGCCGAGTCAAGA 9213 Query 94436 AGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTA 94495 || || |||| | | ||||| | ||| ||||| ||| | |||||||| | Sbjct 9212 AGACAGTGCGTGCTCAGGACTTGTGGTTTGCCATCTTGGACTCGCAGATTGAGACGGGCA 9153 Query 94496 CGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGG 94555 |||||||||| ||| ||||||| || |||| ||| |||||| ||| || | || Sbjct 9152 CGCCCTACATGCTGTACAAGGACGCTTGCAACCTGAAGAGCAACCAACAGAACTTGGGCA 9093 Query 94556 TGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTG 94615 |||||| || ||||||||||||||||| ||| | || || |||| ||| | | Sbjct 9092 CCATCAAGTCATCCAATCTGTGCACCGAGATCGTCCAATACACGAGCGCGGAAGAGGTGG 9033 Query 94616 CTGTGTGTAACCTGG 94630 | || || ||||||| Sbjct 9032 CGGTCTGCAACCTGG 9018 Score = 111 bits (122), Expect = 2e-19 Identities = 331/506 (65%), Gaps = 10/506 (2%) Strand=Plus/Minus Query 94729 AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAAC 94788 || ||||||| ||| ||||||| |||| | ||||| || |||||||| ||| || Sbjct 8844 AATCTGAACAAGGTCATCGACAGGAACCTGTACCCAGTGCCGGAGGCAGAGCGGAGCAAT 8785 Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATG 94848 | || ||| |||||||| ||| | ||||| ||||| | || ||| | | | | | | Sbjct 8784 CGGAGGCACCGGCCCATTGGCTTGGGCGTGCAGGGCCTGGCCGACACCTTCATCAAGCTT 8725 Query 94849 CGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATT 94908 || || || | ||||||| ||| || | ||| | || || || | ||| Sbjct 8724 CGCCTCCCTTTCGACTCTCCCGAGGCCCGGCAAACGAACCAAGAAATCTTTGAGACCATG 8665 Query 94909 TATTACGGGGCCA-TGAAACAATCCGTCCA-CTTGGCCAGATCGGACGGCGGGCCACACG 94966 || | || ||| ||| | ||| | | |||| | ||| | | || || ||| Sbjct 8664 TACTTCGCCGCCTCTGAGGCC-TCCATGGAGCTTGCCAAGAAAGAA----GGCCCCTACG 8610 Query 94967 AATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGA 95026 | |||| || || || ||| || || | || || |||||||||||||| || | Sbjct 8609 AGTCGTACCCGGGGTCTCCCGCCAGTCAAGGGAAGTTGCAATTCGACCTCTGGGGCGTCA 8550 Query 95027 AGCCCTCG---GGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTG 95083 ||| || | || ||||||| || | || || || | | ||||| Sbjct 8549 CTCCCCAAAGCGGCCGGTGGGACTGGGCAGGTTTAAAGAAAGAGATTGCCCAGCACGGCC 8490 Query 95084 TGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCA 95143 || || | |||||| |||| || |||||||| ||||||||||| ||||||||||| Sbjct 8489 TGCGCAATTCCCTGCTTTTGGCGCCTATGCCCACCGCCTCCACGGCCCAGATCCTTGGGT 8430 Query 95144 ACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGG 95203 |||| |||| ||||||||| |||||| ||| ||||| |||| ||| || || | Sbjct 8429 ACAATGAGTGCATCGAACCCTACACCTCGAACTTGTACGCACGGCGAGTGAAGGCAGGAG 8370 Query 95204 AATTCCCCGTCATCAACAAGCACCTC 95229 | ||| || ||||| ||||||| Sbjct 8369 AGTTCATTGTGGTCAACCCGCACCTC 8344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494680777485600