Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq802 134 1e-26 seq259 125 7e-24 seq2149 104 2e-17 seq6464 82.4 7e-11 >seq802 Length=4370 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || || ||||| ||||| || | || |||||||| ||||| ||||| || | Sbjct 260 CCACCACGCAAGCGCAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 319 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| ||||| ||| | || | |||||||||||||| || Sbjct 320 AGCGTGCGTCCGTCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGA 379 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| || || ||||| | | ||||| ||| || | |||||| Sbjct 380 ATGCCCTCCTTGTCTTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACA 439 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || | || | || ||||| ||||| || || || || |||||||||| Sbjct 440 TCCAATGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGG 488 >seq259 Length=12200 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || ||||||| |||||||||| ||||||||||| ||||| ||||| || | Sbjct 5802 CCGCCACGCAATCGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGAC 5743 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || | || | ||||||||||| || || Sbjct 5742 AACGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGGG 5683 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| || |||||||| | | |||| ||||| | ||| || Sbjct 5682 ATACCCTCCTTGTCCTGAATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCACG 5623 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || ||||| ||||| || || ||||| || ||||| Sbjct 5622 TCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTAACAAAGATTTGCAT 5576 >seq2149 Length=43014 Score = 104 bits (114), Expect = 2e-17 Identities = 284/426 (67%), Gaps = 12/426 (3%) Strand=Plus/Minus Query 145756 GTGCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTC 145815 || || || ||||||||||||||||||||| |||| ||| | || ||||| ||| Sbjct 35077 GTCCGTAGGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGAATAGAAGTGCATG--- 35021 Query 145816 GACATGACC-GAGTA--CGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCA 145872 || ||| | | | | ||| || | ||| | | | ||| ||||| || |||| Sbjct 35020 GAGGTGAGCTGTGCAGGCGTCGGATTGGCCAAATGGATATTGAGAGACTGCGACTGACAG 34961 Query 145873 ATGAAAGGAGCC-CGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGC 145931 ||| | || ||| |||||||||||| ||| |||| |||||| || ||||| | Sbjct 34960 ATGTA-GGCGCCGCGGTCGGCGGCCTGGTCGATCACGCACTTCTGCCGGATCTCCCACAC 34902 Query 145932 GGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGA-CCCAT 145990 || || | || ||||||| | | | || || | | | ||||| || || ||| | Sbjct 34901 TGTCTTGTACAGGTCCTTGAGCTCCCGAGGGATGCTGGCCACATTCTGGACTGAGCCCCT 34842 Query 145991 TTTCGGCCAATATTTTG-TTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCC 146049 || ||| ||| |||| || || | ||| | ||| | | | ||| | |||| | Sbjct 34841 GTT--GCCCATAATTTGATTTCGGACTTCAGAAGTCCACAGGCCTTGGTCGATGAGGTCG 34784 Query 146050 TTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACG 146109 || || |||| ||| |||||| || ||||| || | ||||| | |||| | Sbjct 34783 CGGAGCAGGTACTTGTTCACCACCGTGAATTCGCCCGCCAACACGCGACGGGAGTACATG 34724 Query 146110 TTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTA 146169 || ||||| ||||| | ||||||||||| || || |||||||| || | |||||| Sbjct 34723 TTCGATGTGAAAGGCTCAACAGACTCGTTGTTGCCCAGGATCTGCGCAGTAGATGCGGTA 34664 Query 146170 GGCATG 146175 |||||| Sbjct 34663 GGCATG 34658 >seq6464 Length=44462 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || || || | || | ||||||||||| || || || |||||||| Sbjct 38432 ATCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGGATCCCCTCCTT 38491 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||||| | | || | |||||| | ||| || || | || | Sbjct 38492 GTCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACGTCCAAAGTAAT 38551 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || ||||| ||||| || || || ||||| ||||||||| Sbjct 38552 GGTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCATGGCT 38591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475460025806400