Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq2348 762 0.0 >seq2348 Length=90098 Score = 762 bits (844), Expect = 0.0 Identities = 746/955 (78%), Gaps = 10/955 (1%) Strand=Plus/Minus Query 7544 TCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACGG 7603 || |||||||||||||| || ||||| |||||||| |||||||| || | | |||||||| Sbjct 64500 TCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGG 64441 Query 7604 TTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTTG 7663 |||| | ||| ||||| ||||| | ||||||||||| | ||||| | || |||||| Sbjct 64440 TTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGGCTATCAACAACTGATTGGTTG 64381 Query 7664 AAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATG 7723 |||||||| ||||| | |||||||||||| ||||||| ||||||||||| |||||||| Sbjct 64380 AAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTAACCAGATA 64321 Query 7724 CCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCG 7783 || ||||||||||| || || | ||||||||| | | ||| ||||||||||| ||| Sbjct 64320 CCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAACTTGCG 64261 Query 7784 TATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCT 7843 ||||||||||| | ||| |||||||| ||||| ||||| ||||||||||| || |||||| Sbjct 64260 TATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCT 64201 Query 7844 TCTTGACCGAACTTATAACCATAGTT--CTGGGACTCAGACT-CAGTGGTTTCACGAACC 7900 ||||| || || || ||||| ||||| | | || | | || |||| |||||| | Sbjct 64200 TCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACACCGTCTTCAGT---TTCACGGATT 64144 Query 7901 AGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCA 7960 | | ||| |||||||| ||||||||||| |||||||| | ||| |||||||| |||||| Sbjct 64143 AAACTAGATGTTACAAGAGAACCATGCATTGCACTGAATAAAGATCCACCAAACACACCA 64084 Query 7961 GCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGC 8020 || || || ||| ||||| |||||||| || |||||||| ||||||||||| || | | Sbjct 64083 GCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACTAAC 64024 Query 8021 ATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCG 8080 ||| ||||||| ||||||||||| || | ||||||| | |||||||| |||||| ||| Sbjct 64023 ATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCTTGTCCG 63964 Query 8081 AAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAG 8140 | || || | | |||||| ||| ||||||||| |||||||| ||| | ||||| | Sbjct 63963 ATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCTACGAAA 63904 Query 8141 ATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAG 8200 ||||| |||||||| |||| |||||| ||||||||| ||||| |||||||| ||| || Sbjct 63903 ATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTA-GCA-AG 63846 Query 8201 ATAC--CGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACT 8258 ||| | | | |||||| || | || |||||| |||||||||||||||| ||||| | Sbjct 63845 CTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCATT 63786 Query 8259 CATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAG 8318 | || | ||| || |||||||| | || |||||||| | |||||||||||||||| | Sbjct 63785 CGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAACTTG 63726 Query 8319 GAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCAC 8378 ||| ||| ||||| | ||| |||||||| || || | || || ||||| || ||||||| Sbjct 63725 GAATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTTCAC 63666 Query 8379 GGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAAACAAATAGCAG 8438 |||| || || || || || ||||| || |||| |||||||| |||||| || | | || Sbjct 63665 GGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTGTAG 63606 Query 8439 CAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATT 8493 | | | | ||||| ||||| | |||||||||||||||| || | ||| || Sbjct 63605 CTGTTAATAATGTAGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTT 63551 Score = 589 bits (652), Expect = 3e-163 Identities = 744/1020 (73%), Gaps = 2/1020 (0%) Strand=Plus/Plus Query 6257 TATCACAGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGT 6316 ||| | || ||||| || | ||| || || || || || |||||||| |||||||||||| Sbjct 4081 TATTAAAGGGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACAAAATTTTCATGTGGT 4140 Query 6317 TGATCCACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAG 6376 || ||| || |||||||| | | | |||||| || |||| ||| || || |||||| Sbjct 4141 TGGTCCTGTGCGGCCATCCATGATCTAATACCTTCGTTTAATAAGATATTTTTAGTATAG 4200 Query 6377 AACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCT 6436 || || || || |||||||| || ||||| | | |||||| || ||||||||||| ||| Sbjct 4201 AAAGTTTCAAATTCTGGATCTTCAGCTGCACGAAGCTCTTGAGATACAAAGTCATATGCT 4260 Query 6437 CTAAGGTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGA 6496 || | ||| | ||| | ||| | ||||||| | ||||| | ||| | || ||| Sbjct 4261 CTTAAGTTTAATGCTAAACCTACTATACCAAAAGAACTTGTCCATAAACCTGTTACTGGA 4320 Query 6497 ACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGA 6556 ||||| | ||| |||||||| |||||||| || || || || | |||||| || || Sbjct 4321 ACAAATAACATGAAGAAATGAAGCCAACGTTTGTTAGAAAAAGCAACACCAAAAATTTGT 4380 Query 6557 GACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAAC 6616 |||||||| | || || || ||||| ||||| || || ||| |||||| || || Sbjct 4381 GACCAGAATCTGTTCGCTGTTACCATTGAATAAGTTTCTTCTGATTGTGTTGGTGTGAAA 4440 Query 6617 GCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCG 6676 || ||| ||||| | ||||||||||| || || || || ||||||||||| || Sbjct 4441 GCACGGAATGTATTCGCAGCATCACCATCTTCGAATAATGTGTTTTCTACAGTAGCTCCA 4500 Query 6677 TGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGG 6736 ||||| ||| | | | ||| |||||||| || ||||||||||||||||| || || || Sbjct 4501 TGAATTGCAGATAATAGTGCACCACCTAAAATTCCTGCTACACCCATCATGTGGAATGGA 4560 Query 6737 TTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACA 6796 || || |||||||| ||||| || |||| ||| | || ||| ||||| || |||||||| Sbjct 4561 TTAAGTGTCCAGTTATGGAAACCTTGTAAGAATAATAGGAATCGGAAAATAGCTGCAACT 4620 Query 6797 CCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGAC 6856 ||||| || |||||||||||||| | ||||| | |||||| || | || ||||| Sbjct 4621 CCAAAACTAGGAGCAAAGAACCAACTTGCTTGTCCTAAAGGATAGATTAAGAATACAGAA 4680 Query 6857 ACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA 6916 || || || || || || || ||||| || |||||||| || ||||||||||| || ||| Sbjct 4681 ACGAATACTGCGATAGGTCCTGAAAATGCAATTGCATTATACGGACGAATACCTACAAGA 4740 Query 6917 CGTGCGATCTCAAACTGCCG-AAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGC 6975 || || || ||||| || || || || ||| || || | |||| || || || | || Sbjct 4741 CGAGCAATTTCAAATTGTCGTAAACA-GAATCCAATTAATCCAAATGCCCCATGTAATGC 4799 Query 6976 CACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGG 7035 ||||||| ||||| ||| || | ||| ||||| || |||||||| || || ||||| Sbjct 4800 GACAAAAGTCCATAATCCACCTATTTGAAGCCAACGAGTAAAATCTCCTTGTGCCTCTGG 4859 Query 7036 ACCCCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGT 7095 ||||||| | | | ||||| || | | | ||||| ||||||||||| |||| Sbjct 4860 TCCCCATAATAAGATCAATGAATGACCCATACTATTTGCAGGTGTTGATACAGCTACAGT 4919 Query 7096 AAGGAAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGAC 7155 | ||| || |||||||| | || |||||||| | || || |||||||| || || Sbjct 4920 TAAGAAGTTGCATCCCTCTAAGTAAGAAGAAGCTAATCCATGTGTGTACCAAGATGTAAC 4979 Query 7156 GAAAGTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAG 7215 ||||| || || || | ||| || || | ||| || | || || || || | | ||| Sbjct 4980 AAAAGTAGTACCTGTTAACCATCCACCAACTGCAAGAAATGCTGTTGGAAATAATAAAAG 5039 Query 7216 ACCTGACCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275 |||||||||||||| ||| ||||| | ||| || || | ||||||||||| || ||||| Sbjct 5040 ACCTGACCAACCAATAAATACGAAACGATCTCGTTTTAACCAGTCATCGACTAAGTCAAA 5099 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 176133 GGATTTGAACCCCCGTAGGCAGAGCCAGCGGATTTACAGTCCGCCTCCATTAACCACTCG 176192 ||||||||||| ||||||| |||||||||||||||||||||||| || ||||||||||| Sbjct 51066 GGATTTGAACCAACGTAGGCTGAGCCAGCGGATTTACAGTCCGCCCCCTTTAACCACTCG 51125 Query 176193 GACACCTACCCTA 176205 | || | |||||| Sbjct 51126 GGCATCGACCCTA 51138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622071452798400