Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04-
08] 6,860 sequences; 25,618,953 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq2149 187 3e-42
seq1319 152 6e-32
seq441 138 1e-27
seq4979 104 3e-17
seq3418 84.2 3e-11
>seq2149
Length=43014
Score = 187 bits (206), Expect = 3e-42
Identities = 588/902 (65%), Gaps = 23/902 (3%)
Strand=Plus/Minus
Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532
|||||||| || || ||||| |||| ||| || || |||||||||||||||| ||
Sbjct 34141 GTGTACTCGATGATCTCCGTGCACAGATTGGATGATTTGATGGTGCCCAAGTTCTGCTGG 34082
Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592
||||| || ||| || || |||||| | ||||| || ||||| || |||||| |||
Sbjct 34081 TTTGATTTCAGGTTGCAGGCGTCCTTGAACAGCATGTAAGGCGTGCCTGTCTCCACCTGG 34022
Query 116593 GACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCAC--AGTGGCGTTG---GCTCGCC 116647
|| | ||||| || ||| | || ||||| | | | | ||| ||| ||
Sbjct 34021 GAGTCCAGAATCGCGAACCAGA-----GCTGCTGGGCCTTAATAACCTTGCGTGCTTTCC 33967
Query 116648 CCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACC-CACAGCCTCTGAGAGC 116706
| || |||||| | | |||||| | |||||| || || |||| | || | ||
Sbjct 33966 CACTCTTCTCGTAGCTGGCGTAGAGCTGGTTAAACTCCTCGCCGCACA-CGTCCGCCAGG 33908
Query 116707 CCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 116766
|| || || | || || || || ||||| | || | ||| || ||| ||||
Sbjct 33907 CCCGGGCACTCGTTGGGGCAAAAAAGGGACCAGTCCCCGTCGCTCTCCACGCGCCGCATG 33848
Query 116767 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCCC 116824
|| ||||| || ||||||| || |||| ||||| || || ||| | || | |
Sbjct 33847 AACAGGTCGGGCGTCCAGAGGGCGTAGAACAGATCACGT--GCACGCTCCAACTCGTTGC 33790
Query 116825 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 116884
| || || ||||| |||| || || | ||| || || ||||| || || ||||| |
Sbjct 33789 CGTGGTTCTTACGCAGGTCCAGGAATTCAAAGATGTCTGCATGCCAGGGCTCTAGGTAGA 33730
Query 116885 CCGCGATTGACCCCTTGCGA---CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAA 116941
|||| || |||||||| | || |||||| || || | ||||| |||| |
Sbjct 33729 TGGCGAAGGAACCCTTGCGCTTGCCTCCGCCCTGGTCGACGTAGCGGGCCGTATCGTTGA 33670
Query 116942 ATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGA 116999
| ||||| ||||| || | ||| || | || ||| || | || ||||| | |||
Sbjct 33669 AAACGCGGAGCATAGGTACGATGCCGTTGGAGGTGCCGTTCGATCCACGAATGTAGGAGT 33610
Query 117000 CTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 117059
|| | || | | | ||||||| | ||||| || || || | || || ||
Sbjct 33609 CTCGC--GCCCGAATGTTGTGGATGGATACGCCAATCCCACCCGCAAATTTGGAAATGGC 33552
Query 117060 TGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAG 117119
||||| | | |||| || ||||||| || ||||| ||||| |||| | | | |||
Sbjct 33551 AGCGCATTGCTTGAGGGTGTCGTAGATGCCGTCGATGGAGTCCTCCTTCATGGTCAGGAG 33492
Query 117120 GAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTG 117179
||||||| || | ||| |||| ||||| || || ||||| || || || || || ||
Sbjct 33491 GAAGCAGGAGGAGAGTTGGGGCCGCGGTGTGCCGGCATTGAAAAGTGTAGGCGTAGCATG 33432
Query 117180 GATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCC 117239
|||| | | ||||| || ||||||||||| | | | ||||| ||
Sbjct 33431 CGTGAAAAGTTTGAGCGACATGAGATTGTAGGTCTCCAGCGCCGCGTCAATGTTCTCTTT 33372
Query 117240 GTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATC 117299
||| ||||| |||| || ||||| | ||||| ||||| ||||| | | || |
Sbjct 33371 GTGGATACCAATTGCCACACGCATGATCATGTGCTGGGGGCGCTCCATAACTACCCCGTT 33312
Query 117300 GAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTC 117359
| | | | ||||| ||| |||| || || | ||||| ||| || | ||| ||||
Sbjct 33311 CATCTTAAGAAGGTACGACTTTTCCAGCGTTTTAAAGCCAAAGTAGTCATAATCAAAGTC 33252
Query 117360 CC 117361
||
Sbjct 33251 CC 33250
>seq1319
Length=24917
Score = 152 bits (168), Expect = 6e-32
Identities = 582/899 (65%), Gaps = 20/899 (2%)
Strand=Plus/Plus
Query 116485 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 116544
|| || || |||| ||| || ||| |||||||||||||||| ||| || ||| |
Sbjct 9062 ATCTCGGTGCACAGATTGGATGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCAGG 9121
Query 116545 TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 116604
|| || || |||||||| ||||| || ||||| |||||||| | || || | | ||
Sbjct 9122 TTGCAAGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCCAAGATG 9181
Query 116605 GCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTT 116664
|| ||| | || || |||| || ||| |||| ||||| ||||| |||
Sbjct 9182 GCAAACCACAAGTCCTGAGCACGCACTGTCTTCTTGACTCGGCCCTCTCGTTCGTATTTT 9241
Query 116665 GTGTAGAGGGCCTCAAACTCTTCACCCA--CAGCCTCTGAGAGCCCTGGTGCCTTATCTG 116722
|| ||| || || | | || ||| || | ||| || || || ||| |
Sbjct 9242 AAATATAGGTCCCGGAAGGCCTGGCCGTGGCAG--TCCGCGAGACCGGGGCACTGATCGG 9299
Query 116723 GACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 116782
|||| | ||| ||||| | | ||||||| |||| || |||||| ||||| || ||||
Sbjct 9300 GACACATGAGGGACCAGGTCCTATCCTCCTCCACCCTCTCCATGAACAGGTCGGGAATCC 9359
Query 116783 AGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 116842
| || | ||||||||||||| || || || || | || || || |||| |
Sbjct 9360 ATAGTCCATAGAAGAGATCCCGGGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGCAGGT 9419
Query 116843 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGC 116902
||| | || | ||| |||||||||||||| |||||||| | || | | ||||| ||
Sbjct 9420 CCAGCACTTCAAAGATGTCCGCGTGCCACGGCTCCAGGTAGATGGC-AAAGGCCCCTGGC 9478
Query 116903 ----GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGA 116958
| || |||||| || || | |||||| ||| || || | ||||| ||
Sbjct 9479 CTCTTGCCTCCCCCCTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGGC 9538
Query 116959 ATGATACCATCAGATTG-GCCATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTGACA 117015
| | ||| | | | | || || || ||| || || | | | || || | ||
Sbjct 9539 ACCAGACCGT-TGCTCGTCCCCTTCGTGCCCTTAATGTAGGCGCC--GTGCGCGCGGATG 9595
Query 117016 TCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGA 117075
| ||||| | || || ||||| ||| ||| || ||||||| | | ||
Sbjct 9596 TTGTGGACCGAGAGGCCGATTCCCCCCGCCGCCTTGCTTATCACGGCGCACTGCTTCAGC 9655
Query 117076 CTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATT 117135
|| ||||||| ||| |||||||||| | | | || | ||||||||| |||||
Sbjct 9656 GTGTCGTAGATACCAACGATCGAGTCCGCTTGCATGGCCAGGAGGAAGCACGAGGACATC 9715
Query 117136 TGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TG 117194
|| || | || || |||| ||| || || || | |||||||||||| || | |
Sbjct 9716 TGCGGGAAACGCGTGCCCGCGTGGAAAAGAGTAGGGGAGGCGTGGATGAAC-CACTTGTT 9774
Query 117195 GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGA 117254
| ||| ||||||||||||||| | | ||| | || || || || ||||| | |
Sbjct 9775 GCTCATGAGCTCGTAGGTCTCCAAGGCGGCGGGCAGATCCTCTCCATGGATACCAAGGGC 9834
Query 117255 GACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTA 117314
|| |||| || |||||| || || |||| || | | ||| | || | | |||
Sbjct 9835 CACGCGCAGAAGCATGTACTGCGGGCGCTCCACCACCTTGCGCCCGATCTTCAGCAAGTA 9894
Query 117315 -ACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTCCCTCTTCGTGACG 117372
||| | |||| ||| |||| || |||||| ||||| ||| || | | ||||| ||
Sbjct 9895 GGCTCGT-TCCATGGTTTTGAAGCCGAAATAGTCAAAGAAATAATCGCGC-TCGTGTCG 9951
>seq441
Length=67861
Score = 138 bits (152), Expect = 1e-27
Identities = 258/375 (69%), Gaps = 18/375 (5%)
Strand=Plus/Minus
Query 12701 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 12760
|||||| ||||| || |||||||| | ||| | ||| | || || || || || ||
Sbjct 41009 ACGATCGAAGCGGCCCGGGCGGAGCAAGGCCTGGTCCAAGACGTCTGCACGATTGGTGGC 40950
Query 12761 CGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATT 12820
|||||||| | ||| || | | | |||||||| |||||||| |||| || || ||
Sbjct 40949 GGCGATGACGATGATCCCAGGGTTGCCCTCGAAGCCGTCCATCTCGGTCAGCAGCTGGTT 40890
Query 12821 GATGGTTTGTTCACGTTCATCATTCGCG--GGCATACCACCCGCACTGCGTTGCTTACCG 12878
| ||| || || || || || ||| | |||| | | |||| | ||| || ||
Sbjct 40889 CAGGGTCTGCTCCCGCTCGTCGTTCCCTCCGGCAAAGC--CCGCCCCGCGCTGACGGCCC 40832
Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACGG----TTGATTTTCACGGGCAACTTC 12934
||||| ||||| ||||| || |||| ||| || || || | ||| | | |||
Sbjct 40831 ACGGCATCAATCTCGTCGATAAAAATGATGCATGGCGCGTTCTTCTTCGCCTG----TTC 40776
Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT---TGGC 12991
|| ||||| ||||| | | |||||| || |||||||||||||| ||||| | | |
Sbjct 40775 GAACATATCGCGCACACGCGAGGCACCCACCCCCACAAACATCTCAACAAACTCCGAGCC 40716
Query 12992 GGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 13051
||||| | ||||||||| ||| || || ||||||| |||| || || || ||
Sbjct 40715 GGCGGCCGA---GATGAAGGGCACGCCCGACTCCCCCGCGACGGCTTTAGCCAGCAGTGT 40659
Query 13052 CTTCCCCGTCCCTGG 13066
||| |||||||| ||
Sbjct 40658 CTTACCCGTCCCGGG 40644
>seq4979
Length=17524
Score = 104 bits (114), Expect = 3e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639
||||| || ||||||||||||||||||||||||| || || ||||| ||||| |||||
Sbjct 9949 GGCATCAGGCCCCGCTTCTTCAACCAGAAAATCGAGCAGAAGGAGCCGGAGAAAAAGATG 10008
Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699
|||||||| || || || | | ||||||||||| || | |||| || ||
Sbjct 10009 CCCTCCACGGCTGCAAAGGCGATCAAGCGCTCGGCAAAAGACGCGTACTTGCGGTCGCAC 10068
Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAG 127759
||| | |||||| | ||||| || ||| |||||||||| || || | |||
Sbjct 10069 CACCGGAGCGCCCAACGCGCCTTGCGTCGGACACAAGGGACGGTCTCAATGGCGTTTAAG 10128
Query 127760 AGTTCCTTCTTTTCTGATGGATCTTTGATGTA 127791
|| | | || || ||||| | ||||||||
Sbjct 10129 AGCTTGTGTTTCTCGGATGGGTTCTTGATGTA 10160
>seq3418
Length=26553
Score = 84.2 bits (92), Expect = 3e-11
Identities = 178/266 (67%), Gaps = 0/266 (0%)
Strand=Plus/Minus
Query 175924 CGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGAT 175983
||| || || || ||||||| ||||| || || || || | || | |||| | ||
Sbjct 16505 CGCGTCCTTCCCCCCCATGATCCGCGTGCCGAACTGCCCGCTCGGGTAGAGGAAACCAAT 16446
Query 175984 ATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTC 176043
||||| ||||||| | | | |||| || ||||| | | |||| | ||
Sbjct 16445 GTTGTTGGAGCCCACGAAATTTTGGGCCATTCCCACGATCGTCCCGTTCAAGGAGGCCTC 16386
Query 176044 ACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTC 176103
||||||||||||||||| | || | || || | |||| ||| || ||||| |||||
Sbjct 16385 GCCGTGATGGTAGGCCGAGTGCTCGGAGACGTAGCCAGCCAGCTGGGCGACCTTAATCTC 16326
Query 176104 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCC 176163
| |||||||||| | ||||| ||| | | || || | ||| | ||||| || ||
Sbjct 16325 TTTCTTGAGGTTCCGTTTAAAGCAGGCAAAGAGAACTTTCCGCTGGGCCGGCTTCAGCCC 16266
Query 176164 GTCGGCCATGTGTGCGATGGAACGCT 176189
|| || ||| | |||||| ||||
Sbjct 16265 ATCCATCAGGTGGGGGATGGAGCGCT 16240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613454591757600
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