Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2149 187 3e-42 seq1319 152 6e-32 seq441 138 1e-27 seq4979 104 3e-17 seq3418 84.2 3e-11 >seq2149 Length=43014 Score = 187 bits (206), Expect = 3e-42 Identities = 588/902 (65%), Gaps = 23/902 (3%) Strand=Plus/Minus Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 |||||||| || || ||||| |||| ||| || || |||||||||||||||| || Sbjct 34141 GTGTACTCGATGATCTCCGTGCACAGATTGGATGATTTGATGGTGCCCAAGTTCTGCTGG 34082 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 ||||| || ||| || || |||||| | ||||| || ||||| || |||||| ||| Sbjct 34081 TTTGATTTCAGGTTGCAGGCGTCCTTGAACAGCATGTAAGGCGTGCCTGTCTCCACCTGG 34022 Query 116593 GACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCAC--AGTGGCGTTG---GCTCGCC 116647 || | ||||| || ||| | || ||||| | | | | ||| ||| || Sbjct 34021 GAGTCCAGAATCGCGAACCAGA-----GCTGCTGGGCCTTAATAACCTTGCGTGCTTTCC 33967 Query 116648 CCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACC-CACAGCCTCTGAGAGC 116706 | || |||||| | | |||||| | |||||| || || |||| | || | || Sbjct 33966 CACTCTTCTCGTAGCTGGCGTAGAGCTGGTTAAACTCCTCGCCGCACA-CGTCCGCCAGG 33908 Query 116707 CCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 116766 || || || | || || || || ||||| | || | ||| || ||| |||| Sbjct 33907 CCCGGGCACTCGTTGGGGCAAAAAAGGGACCAGTCCCCGTCGCTCTCCACGCGCCGCATG 33848 Query 116767 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCCC 116824 || ||||| || ||||||| || |||| ||||| || || ||| | || | | Sbjct 33847 AACAGGTCGGGCGTCCAGAGGGCGTAGAACAGATCACGT--GCACGCTCCAACTCGTTGC 33790 Query 116825 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 116884 | || || ||||| |||| || || | ||| || || ||||| || || ||||| | Sbjct 33789 CGTGGTTCTTACGCAGGTCCAGGAATTCAAAGATGTCTGCATGCCAGGGCTCTAGGTAGA 33730 Query 116885 CCGCGATTGACCCCTTGCGA---CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAA 116941 |||| || |||||||| | || |||||| || || | ||||| |||| | Sbjct 33729 TGGCGAAGGAACCCTTGCGCTTGCCTCCGCCCTGGTCGACGTAGCGGGCCGTATCGTTGA 33670 Query 116942 ATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGA 116999 | ||||| ||||| || | ||| || | || ||| || | || ||||| | ||| Sbjct 33669 AAACGCGGAGCATAGGTACGATGCCGTTGGAGGTGCCGTTCGATCCACGAATGTAGGAGT 33610 Query 117000 CTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 117059 || | || | | | ||||||| | ||||| || || || | || || || Sbjct 33609 CTCGC--GCCCGAATGTTGTGGATGGATACGCCAATCCCACCCGCAAATTTGGAAATGGC 33552 Query 117060 TGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAG 117119 ||||| | | |||| || ||||||| || ||||| ||||| |||| | | | ||| Sbjct 33551 AGCGCATTGCTTGAGGGTGTCGTAGATGCCGTCGATGGAGTCCTCCTTCATGGTCAGGAG 33492 Query 117120 GAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTG 117179 ||||||| || | ||| |||| ||||| || || ||||| || || || || || || Sbjct 33491 GAAGCAGGAGGAGAGTTGGGGCCGCGGTGTGCCGGCATTGAAAAGTGTAGGCGTAGCATG 33432 Query 117180 GATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCC 117239 |||| | | ||||| || ||||||||||| | | | ||||| || Sbjct 33431 CGTGAAAAGTTTGAGCGACATGAGATTGTAGGTCTCCAGCGCCGCGTCAATGTTCTCTTT 33372 Query 117240 GTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATC 117299 ||| ||||| |||| || ||||| | ||||| ||||| ||||| | | || | Sbjct 33371 GTGGATACCAATTGCCACACGCATGATCATGTGCTGGGGGCGCTCCATAACTACCCCGTT 33312 Query 117300 GAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTC 117359 | | | | ||||| ||| |||| || || | ||||| ||| || | ||| |||| Sbjct 33311 CATCTTAAGAAGGTACGACTTTTCCAGCGTTTTAAAGCCAAAGTAGTCATAATCAAAGTC 33252 Query 117360 CC 117361 || Sbjct 33251 CC 33250 >seq1319 Length=24917 Score = 152 bits (168), Expect = 6e-32 Identities = 582/899 (65%), Gaps = 20/899 (2%) Strand=Plus/Plus Query 116485 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 116544 || || || |||| ||| || ||| |||||||||||||||| ||| || ||| | Sbjct 9062 ATCTCGGTGCACAGATTGGATGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCAGG 9121 Query 116545 TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 116604 || || || |||||||| ||||| || ||||| |||||||| | || || | | || Sbjct 9122 TTGCAAGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCCAAGATG 9181 Query 116605 GCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTT 116664 || ||| | || || |||| || ||| |||| ||||| ||||| ||| Sbjct 9182 GCAAACCACAAGTCCTGAGCACGCACTGTCTTCTTGACTCGGCCCTCTCGTTCGTATTTT 9241 Query 116665 GTGTAGAGGGCCTCAAACTCTTCACCCA--CAGCCTCTGAGAGCCCTGGTGCCTTATCTG 116722 || ||| || || | | || ||| || | ||| || || || ||| | Sbjct 9242 AAATATAGGTCCCGGAAGGCCTGGCCGTGGCAG--TCCGCGAGACCGGGGCACTGATCGG 9299 Query 116723 GACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 116782 |||| | ||| ||||| | | ||||||| |||| || |||||| ||||| || |||| Sbjct 9300 GACACATGAGGGACCAGGTCCTATCCTCCTCCACCCTCTCCATGAACAGGTCGGGAATCC 9359 Query 116783 AGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 116842 | || | ||||||||||||| || || || || | || || || |||| | Sbjct 9360 ATAGTCCATAGAAGAGATCCCGGGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGCAGGT 9419 Query 116843 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGC 116902 ||| | || | ||| |||||||||||||| |||||||| | || | | ||||| || Sbjct 9420 CCAGCACTTCAAAGATGTCCGCGTGCCACGGCTCCAGGTAGATGGC-AAAGGCCCCTGGC 9478 Query 116903 ----GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGA 116958 | || |||||| || || | |||||| ||| || || | ||||| || Sbjct 9479 CTCTTGCCTCCCCCCTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGGC 9538 Query 116959 ATGATACCATCAGATTG-GCCATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTGACA 117015 | | ||| | | | | || || || ||| || || | | | || || | || Sbjct 9539 ACCAGACCGT-TGCTCGTCCCCTTCGTGCCCTTAATGTAGGCGCC--GTGCGCGCGGATG 9595 Query 117016 TCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGA 117075 | ||||| | || || ||||| ||| ||| || ||||||| | | || Sbjct 9596 TTGTGGACCGAGAGGCCGATTCCCCCCGCCGCCTTGCTTATCACGGCGCACTGCTTCAGC 9655 Query 117076 CTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATT 117135 || ||||||| ||| |||||||||| | | | || | ||||||||| ||||| Sbjct 9656 GTGTCGTAGATACCAACGATCGAGTCCGCTTGCATGGCCAGGAGGAAGCACGAGGACATC 9715 Query 117136 TGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TG 117194 || || | || || |||| ||| || || || | |||||||||||| || | | Sbjct 9716 TGCGGGAAACGCGTGCCCGCGTGGAAAAGAGTAGGGGAGGCGTGGATGAAC-CACTTGTT 9774 Query 117195 GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGA 117254 | ||| ||||||||||||||| | | ||| | || || || || ||||| | | Sbjct 9775 GCTCATGAGCTCGTAGGTCTCCAAGGCGGCGGGCAGATCCTCTCCATGGATACCAAGGGC 9834 Query 117255 GACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTA 117314 || |||| || |||||| || || |||| || | | ||| | || | | ||| Sbjct 9835 CACGCGCAGAAGCATGTACTGCGGGCGCTCCACCACCTTGCGCCCGATCTTCAGCAAGTA 9894 Query 117315 -ACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTCCCTCTTCGTGACG 117372 ||| | |||| ||| |||| || |||||| ||||| ||| || | | ||||| || Sbjct 9895 GGCTCGT-TCCATGGTTTTGAAGCCGAAATAGTCAAAGAAATAATCGCGC-TCGTGTCG 9951 >seq441 Length=67861 Score = 138 bits (152), Expect = 1e-27 Identities = 258/375 (69%), Gaps = 18/375 (5%) Strand=Plus/Minus Query 12701 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 12760 |||||| ||||| || |||||||| | ||| | ||| | || || || || || || Sbjct 41009 ACGATCGAAGCGGCCCGGGCGGAGCAAGGCCTGGTCCAAGACGTCTGCACGATTGGTGGC 40950 Query 12761 CGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATT 12820 |||||||| | ||| || | | | |||||||| |||||||| |||| || || || Sbjct 40949 GGCGATGACGATGATCCCAGGGTTGCCCTCGAAGCCGTCCATCTCGGTCAGCAGCTGGTT 40890 Query 12821 GATGGTTTGTTCACGTTCATCATTCGCG--GGCATACCACCCGCACTGCGTTGCTTACCG 12878 | ||| || || || || || ||| | |||| | | |||| | ||| || || Sbjct 40889 CAGGGTCTGCTCCCGCTCGTCGTTCCCTCCGGCAAAGC--CCGCCCCGCGCTGACGGCCC 40832 Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACGG----TTGATTTTCACGGGCAACTTC 12934 ||||| ||||| ||||| || |||| ||| || || || | ||| | | ||| Sbjct 40831 ACGGCATCAATCTCGTCGATAAAAATGATGCATGGCGCGTTCTTCTTCGCCTG----TTC 40776 Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT---TGGC 12991 || ||||| ||||| | | |||||| || |||||||||||||| ||||| | | | Sbjct 40775 GAACATATCGCGCACACGCGAGGCACCCACCCCCACAAACATCTCAACAAACTCCGAGCC 40716 Query 12992 GGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 13051 ||||| | ||||||||| ||| || || ||||||| |||| || || || || Sbjct 40715 GGCGGCCGA---GATGAAGGGCACGCCCGACTCCCCCGCGACGGCTTTAGCCAGCAGTGT 40659 Query 13052 CTTCCCCGTCCCTGG 13066 ||| |||||||| || Sbjct 40658 CTTACCCGTCCCGGG 40644 >seq4979 Length=17524 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| || ||||||||||||||||||||||||| || || ||||| ||||| ||||| Sbjct 9949 GGCATCAGGCCCCGCTTCTTCAACCAGAAAATCGAGCAGAAGGAGCCGGAGAAAAAGATG 10008 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 |||||||| || || || | | ||||||||||| || | |||| || || Sbjct 10009 CCCTCCACGGCTGCAAAGGCGATCAAGCGCTCGGCAAAAGACGCGTACTTGCGGTCGCAC 10068 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAG 127759 ||| | |||||| | ||||| || ||| |||||||||| || || | ||| Sbjct 10069 CACCGGAGCGCCCAACGCGCCTTGCGTCGGACACAAGGGACGGTCTCAATGGCGTTTAAG 10128 Query 127760 AGTTCCTTCTTTTCTGATGGATCTTTGATGTA 127791 || | | || || ||||| | |||||||| Sbjct 10129 AGCTTGTGTTTCTCGGATGGGTTCTTGATGTA 10160 >seq3418 Length=26553 Score = 84.2 bits (92), Expect = 3e-11 Identities = 178/266 (67%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 175924 CGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGAT 175983 ||| || || || ||||||| ||||| || || || || | || | |||| | || Sbjct 16505 CGCGTCCTTCCCCCCCATGATCCGCGTGCCGAACTGCCCGCTCGGGTAGAGGAAACCAAT 16446 Query 175984 ATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTC 176043 ||||| ||||||| | | | |||| || ||||| | | |||| | || Sbjct 16445 GTTGTTGGAGCCCACGAAATTTTGGGCCATTCCCACGATCGTCCCGTTCAAGGAGGCCTC 16386 Query 176044 ACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTC 176103 ||||||||||||||||| | || | || || | |||| ||| || ||||| ||||| Sbjct 16385 GCCGTGATGGTAGGCCGAGTGCTCGGAGACGTAGCCAGCCAGCTGGGCGACCTTAATCTC 16326 Query 176104 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCC 176163 | |||||||||| | ||||| ||| | | || || | ||| | ||||| || || Sbjct 16325 TTTCTTGAGGTTCCGTTTAAAGCAGGCAAAGAGAACTTTCCGCTGGGCCGGCTTCAGCCC 16266 Query 176164 GTCGGCCATGTGTGCGATGGAACGCT 176189 || || ||| | |||||| |||| Sbjct 16265 ATCCATCAGGTGGGGGATGGAGCGCT 16240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613454591757600