Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1319 194 3e-44 seq2149 118 2e-21 >seq1319 Length=24917 Score = 194 bits (214), Expect = 3e-44 Identities = 491/743 (66%), Gaps = 8/743 (1%) Strand=Plus/Plus Query 204887 ACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGACTTG 204946 |||||||||||||||| || |||| | |||| | ||| ||||| ||| Sbjct 9059 ACGATCTCGGTGCACAGATTGGATGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTC 9118 Query 204947 CGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCGCAGA 205006 |||| || | ||||||||||| |||| | ||| | || |||| ||||| || || Sbjct 9119 AGGTTGCAAGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCCAAG 9178 Query 205007 ATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTA-CATCCCTTGAGACTCGTA 205065 ||| |||||| || |||| |||| |||| | | |||| | ||||| Sbjct 9179 ATGGCAAACCACAAGTCCTGAGCACGCACTGTCTTCTTGACTCGGCCCTCTCGT-TCGTA 9237 Query 205066 TTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTTTT 205125 |||| || || || ||| | |||| |||| || || || || | | Sbjct 9238 TTTTAAATATAGGTCCCGGAAGGCCTGGCCGTGGCAGTCCGCGAGACCGGGGCACTGATC 9297 Query 205126 GGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGAT 205185 ||||||||| || ||||| || ||| || | |||||||||||| ||||||||| || Sbjct 9298 GGGACACATGAGGGACCAGGTCCTATCCTCCTCCACCCTCTCCATGAACAGGTCGGGAAT 9357 Query 205186 CCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAA 205245 ||| || || || || ||||| ||||||| | || | ||| ||||||| || Sbjct 9358 CCATAGTCCATAGAAGAGATCCCGGGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGCAG 9417 Query 205246 GTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGG 205305 ||||||| | ||||| |||||||||||||| | | | ||| | || ||||| Sbjct 9418 GTCCAGCACTTCAAAGATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCCCCTGG 9477 Query 205306 CCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGG 205365 ||||||| || ||||||||||| ||| | | | ||| ||| || | ||||| || Sbjct 9478 CCTCTTGCCTCCCCCCTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGG 9537 Query 205366 CACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCACGTT 205425 ||||||||||||| ||||| ||||||| || ||| | ||| | || | | ||| Sbjct 9538 CACCAGACCGTTGCTCGTCCCCTTCGTGCCCTTAATGTAGGCGCCGTGCGCGCGGATGTT 9597 Query 205426 GGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTTGCAGAGT 205485 | || | ||| || || || | |||| ||| |||||||| | ||| || Sbjct 9598 GTGGACCGAGAGGCCGATTCCCCCCGCCGCCTTGCTTATCACGGCGCACTGCTTCAGCGT 9657 Query 205486 GCTGTAGATGCCTGCGATGGAATCGTCCGC---CAGTGTCACCAGATAGCACGAAGCCAG 205542 | |||||| || |||| || |||||| || | || || ||||||| | || Sbjct 9658 GTCGTAGATACCAACGATCGA---GTCCGCTTGCATGGCCAGGAGGAAGCACGAGGACAT 9714 Query 205543 CTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGCTTCTC 205602 || | || |||||||||||||| || || ||| ||||||| |||| | ||| | Sbjct 9715 CTGCGGGAAACGCGTGCCCGCGTGGAAAAGAGTAGGGGAGGCGTGGATGAACCACTTGTT 9774 Query 205603 GCTCAAACACCTGTAGGTCTCCA 205625 ||||| | ||||||||||| Sbjct 9775 GCTCATGAGCTCGTAGGTCTCCA 9797 >seq2149 Length=43014 Score = 118 bits (130), Expect = 2e-21 Identities = 384/581 (66%), Gaps = 14/581 (2%) Strand=Plus/Minus Query 203838 TCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGC 203897 |||| |||||||||||||| ||||| | | | |||| | | | || |||||||||| Sbjct 35118 TCTTATCCACCGTGAACTGTATGGCATCCGCCTTGGGCCGGGTCCGTAGGTAGTACATGC 35059 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG-TTTGCTCACGTTG 203956 ||||||| || ||||||| ||| || | ||||||||| | || | ||| || | Sbjct 35058 CGGTCTTGAGCCCCTTCTTCCAGGAATAGAAGTGCATGGAGGTGAGCTGTGCAGGCG-TC 35000 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015 || | ||||| || || || |||||||| || |||| ||||||| || || || Sbjct 34999 GGATTGGCCAAATGGATATTGAGAGACTGCGACTGACAGATG-TAGGCGCCGCGGTCGGC 34941 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGT 204075 |||| | ||| | | ||||||| ||||||||||| |||||| ||| ||| || Sbjct 34940 GGCCTGGTCGATCACGCACTTCTGCCGGATCTCCCACACTGTCTTGTACAGGTCCTTGAG 34881 Query 204076 GTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 | |||| | || |||| | || || ||||| ||| | |||| | | | || Sbjct 34880 CTCCCGAGGGA-TGCTGGCCACATTCTGGACTGAGCCCCTGTTGCCCAT-AATTTGATTT 34823 Query 204135 TCGTC-TCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 | | || ||||| ||| ||| || || || | ||||| ||| | Sbjct 34822 CGGACTTCAGAAGTCCACAGGCCTTGGTCGATGAGGTCGCGGAGCAGGTACTTGTTCACC 34763 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 | | || || || | || ||| | |||| | ||| ||| ||||| || || | Sbjct 34762 ACCGTGAATTCGCCCGCCAACACGCGACGGGAGTACATGTTCGATGTGAAAGGCTCAACA 34703 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 | |||||||||||| | ||||| || || || || |||||||| || || | || Sbjct 34702 GACTCGTTGTTGCCCAGGATCTGCGCAGTAGATGCGGTAGGCATGGGTGCGAGCAATAGT 34643 Query 204314 GAGTTGCGCACACCGTATTTTTGGACCCTG-CGCTTCAGAGAGGTCCAGTCGTGCATCGC 204372 |||||||| ||||||| | || || || || | | | || |||||| || || Sbjct 34642 GAGTTGCGGACACCGTGCTCCTGCACTTTGAAGCGT-AAACCGGCCCAGTC--CCAGCGA 34586 Query 204373 ACT--GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCC 204411 | ||| ||||||||||||||||||| || |||| ||| Sbjct 34585 GTTGAGGGGGTCACGCCCCACATGTCGAATTGGAAGACGCC 34545 Score = 109 bits (120), Expect = 9e-19 Identities = 400/621 (64%), Gaps = 14/621 (2%) Strand=Plus/Minus Query 204923 CCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATT 204982 |||| | ||||||||| || || |||| |||| ||||||| ||| |||| | ||| | Sbjct 34096 CCCAAGTTCTGCTGGTTTGATTTCAGGTTGCAGGCGTCCTTGAACAGCATGTAAGGCGTG 34037 Query 204983 CCGTTCTCCATCTGAGATCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCA----CTTG 205038 || |||||| ||| || |||||| | ||| | | | |||| | |||| Sbjct 34036 CCTGTCTCCACCTGGGAGTCCAGAATCGCGAACCAGAGCTGCTGGGCCTTAATAACCTTG 33977 Query 205039 CTTCACGTACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTA 205098 | | | | | ||| |||||| | | ||| ||| ||| || ||| | Sbjct 33976 CGTGCTTTCCCACTCTT----CTCGTAGCTGGCGTAGAGCTGGTTAAACTCCTCGCCGCA 33921 Query 205099 CACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTT 205158 ||||||| ||| || || || | ||||| || | || ||||| | ||| | Sbjct 33920 CACGTCCGCCAGGCCCGGGCACTCGTTGGGGCAAAAAAGGGACCAGTCCCCGTCGCTCTC 33861 Query 205159 CACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAAT 205218 ||| | | ||| ||||||||| |||| ||| |||| ||||||||||| || | Sbjct 33860 CACGCGCCGCATGAACAGGTCGGGCGTCCAGAGGGCGTAGAACAGATCACGTGCAC--GC 33803 Query 205219 TCC--GTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCAC 205276 ||| |||| || ||||||| || |||||| | | ||||| || ||||| Sbjct 33802 TCCAACTCGTTGCCGTGGTTCTTACGCAGGTCCAGGAATTCAAAGATGTCTGCATGCCAG 33743 Query 205277 GGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGA 205336 ||||||| | | ||| | | || | |||| || |||||||| || ||| Sbjct 33742 GGCTCTAGGTAGATGGCGAAGGAACCCTTGCGCTTGCCTCCGCCCTGGTCGACGTAGCGG 33683 Query 205337 GTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTG 205396 | | | |||||||||| || ||||| || || | ||||||| ||| ||||||| | Sbjct 33682 GCCGTATCGTTGAAAACGCGGAGCATAGGTACGATGCCGTTGGAGGTGCCGTTCGATCCA 33623 Query 205397 TTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACAC 205456 ||| ||| || |||| | |||| ||||| |||||||||| || | | | Sbjct 33622 CGAATGTAGGAGTCTCGCGCCCGAATGTTGTGGATGGATACGCCAATCCCACCCGCAAAT 33563 Query 205457 TTGGCGATCTGGGCGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGC 205515 |||| || ||||| | |||| || ||| ||||||||| ||||||| || ||| Sbjct 33562 TTGGAAATGGCAGCGCATTGCTTG-AGGGTGTCGTAGATGCCGTCGATGGAGTCCTCCTT 33504 Query 205516 CAGTGTCACCAGATAGCACGA 205536 || |||| || |||| || Sbjct 33503 CATGGTCAGGAGGAAGCAGGA 33483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795087015441600