Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq802 136 9e-27 seq259 123 6e-23 seq6464 102 2e-16 >seq802 Length=4370 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 || ||| | ||| | || ||||| || || | ||||||||||| || || | ||| || Sbjct 274 CAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGCGTGCGTCCGTC 333 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||||||| ||||| || || |||||||| || || ||| || || || Sbjct 334 TTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTGTC 393 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||||||||||||||| ||||| ||| || | | || |||||||| ||||| || Sbjct 394 TTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACATCCAATGTGATGGT 453 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || || || || || || Sbjct 454 CTTGCCCGTCAGGGTCTTGACGAAGATCTG 483 >seq259 Length=12200 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 || |||||| | || || || ||||| || || | ||||||||||| ||| || | || Sbjct 5791 TCGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGACAACGTGCGCCC 5732 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 || ||||||||||| || || || ||||| |||||||| || || || || || Sbjct 5731 GTCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGGGATACCCTCCTT 5672 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||||||||| |||||||| |||| ||||| | | || || || | |||||| Sbjct 5671 GTCCTGAATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCACGTCGAGCGTGAT 5612 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || ||||| ||||| Sbjct 5611 GGTCTTGCCCGTCAGCGTCTTAACAAAGATTTG 5579 >seq6464 Length=44462 Score = 102 bits (112), Expect = 2e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 199466 GTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATT 199525 ||||| ||||| || |||||||| ||||| || ||||| |||||||| || || || Sbjct 38424 GTCCTCCCATCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGGATC 38483 Query 199526 CCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCC 199585 || || ||||| |||||||||||||| || | |||||| | | || || ||| Sbjct 38484 CCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACGTCC 38543 Query 199586 AACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| ||||| || || || || |||||||| Sbjct 38544 AAAGTAATGGTCTTGCCCGTCAGGGTCTTAACGAAAATTTG 38584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178817980159620