Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq259 150 2e-31 seq802 132 5e-26 seq6464 113 5e-20 >seq259 Length=12200 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 || |||| |||| ||| | ||| ||| || || || |||||||| || | |||||| Sbjct 5793 AATCGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGACAACGTGCGC 5734 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 |||| || |||||||| || || || || | ||||||||| || | || | | |||| Sbjct 5733 CCGTCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGGGATACCCTCC 5674 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555 |||||| ||||||| ||| | || | | |||||| || | ||||| || | |||| Sbjct 5673 TTGTCCTGAATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCACGTCGAGCGTG 5614 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| |||||||||||||| ||||||||||||||||| Sbjct 5613 ATGGTCTTGCCCGTCAGCGTCTTAACAAAGATTTGCAT 5576 >seq802 Length=4370 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 || ||||| |||| ||||| || ||| || || || |||||||| || || ||||| Sbjct 269 AAGCGCAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGCGTGCGT 328 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 |||| || |||||||| || ||||| || | ||||||||| |||| || | || |||| Sbjct 329 CCGTCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGAATGCCCTCC 388 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555 ||||| ||||| | ||| | | | | || ||||| | || ||||||| ||| Sbjct 389 TTGTCTTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACATCCAATGTG 448 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| ||||||||||| || || || ||||| ||||| Sbjct 449 ATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 486 >seq6464 Length=44462 Score = 113 bits (124), Expect = 5e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||||||||| || || | ||||||||| || | || | | ||||||| Sbjct 38433 TCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGGATCCCCTCCTTG 38492 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| | ||| | || | | |||||||| | ||||| |||| || ||| Sbjct 38493 TCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACGTCCAAAGTAATG 38552 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||||||||| || ||||| || |||||||| Sbjct 38553 GTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCAT 38587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565189930807200