Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04-
08] 6,860 sequences; 25,618,953 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq259 134 1e-26
seq802 131 2e-25
seq4979 91.5 1e-13
>seq259
Length=12200
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || || || ||||| |||||||| |||||||| ||||||| ||| |||
Sbjct 5576 ATGCAAATCTTTGTTAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCCAGT 5635
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | || | || || | ||||| ||||| || ||| | || ||
Sbjct 5636 GACACGATCGAGAATGTGAAGCAGAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCAG 5695
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| ||||||| ||||| || |||||||| |||| |||||| | |||||||||
Sbjct 5696 CAGCGCCTCATTTTTGCGGGGAAGCAGCTGGAGGACGGGCGCACGTTGTCTGACTACAAC 5755
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| || || || | || || |||||||| ||||| ||| | |||||
Sbjct 5756 ATTCAGAAAGAGTCTACCCTACATTTGGTCCTGCGATTGCGTGGCGG 5802
>seq802
Length=4370
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || |||||||| |||||||| | || |||||| ||| |
Sbjct 486 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACATTGGATGTCGAGCCCAGC 427
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | ||| | || |||| || | ||||| ||||| |||||| |||| ||
Sbjct 426 GATACCATCGAAAATGTGAAGCAAAAGATTCAAGACAAGGAGGGCATTCCCCCCGATCAG 367
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || |||| ||| || || |||||||| |||| ||||| || |||||||||
Sbjct 366 CAGCGCCTAATTTTCGCAGGAAAGCAGCTGGAAGACGGACGCACGCTGTCTGACTACAAC 307
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| || || || | || |||| ||||| |||| ||| | || ||
Sbjct 306 ATTCAGAAAGAGTCAACCTTGCACTTGGTCTTGCGCTTGCGTGGTGG 260
>seq4979
Length=17524
Score = 91.5 bits (100), Expect = 1e-13
Identities = 194/290 (67%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 132958 GGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACG 133017
||||| ||||| || || || | ||| || || | | ||| ||| || || |||| |
Sbjct 9949 GGCATCAGGCCCCGCTTCTTCAACCAGAAAATCGAGCAGAAGGAGCCGGAGAAAAAGATG 10008
Query 133018 CCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATC 133077
||||| ||||| || || || | || ||||||| | || | || | |||| | || |
Sbjct 10009 CCCTCCACGGCTGCAAAGGCGATCAAGCGCTCGGCAAAAGACGCGTACTTGCGGTCGCAC 10068
Query 133078 CAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAAC 133137
|| || |||||||| ||||| | ||| || || | || || |||||||| ||
Sbjct 10069 CACCGGAGCGCCCAACGCGCCTTGCGTCGGACACAAGGGACGGTCTCAATGGCGTTTAAG 10128
Query 133138 AAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCC 133197
| | ||||||| | | | ||| ||||| || ||| ||||||| ||
Sbjct 10129 AGCTTGTGTTTCTCGGATGGGTTCTTGATGTAAGTGTCAATAAGGAGGGAATACACCTCA 10188
Query 133198 GAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTC 133247
||| | || || ||||||||||| || ||||| ||||| || |||||
Sbjct 10189 CTGTGAATATTTTCGATGGCGATTTGGAAACCGTAGAAGCATCGAGCCTC 10238
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500129910182400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |