Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_014467.1 Length=176788 Score E Sequences producing significant alignments: (Bits) Value seq5823 89.7 6e-13 >seq5823 Length=45548 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 40035 AAAGAAAAACCAGACGATCGCGGGATCATCGTTTCCGCCTGGAACCCTGTTGATCTTGAT 40094 || || || ||||| |||||| | ||||| || || ||||||||||| | ||| | | Sbjct 5932 AAGGACAACCCAGAGGATCGCCGCATCATTGTATCGGCCTGGAACCCCGCGGATTTGGGA 5873 Query 40095 GATATGGCTTTGCGTCCGTGTCAC-TGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACT 40153 | ||||| ||| ||||||||| ||||| | ||| ||| ||| |||| | || Sbjct 5872 AAGATGGCCCTGCCGCCGTGTCACATGTTT-TGCCAATTCTACGTCGCAGACGGAGAGCT 5814 Query 40154 GTCTCTACAGTGGTATCAGCGTTCAGTTGATGTCTTCTTAGGGTTGCCGTTCAATATCGC 40213 ||| ||| |||||||||||| | || | || || ||||||||||||| || Sbjct 5813 CTCTTGTCAGATGTATCAGCGTTCCGCAGACATGGGGTTGGGTGTGCCGTTCAATATTGC 5754 Query 40214 CTCCTACGCTCTCCTGAC 40231 ||| ||||| ||| |||| Sbjct 5753 CTCTTACGCACTCTTGAC 5736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565545100348800