Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2348 140 1e-27 >seq2348 Length=90098 Score = 140 bits (154), Expect = 1e-27 Identities = 207/295 (70%), Gaps = 15/295 (5%) Strand=Plus/Minus Query 451311 CAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAA 451370 |||| || | || || |||||||| || || ||||| ||||| | ||| | ||||||| Sbjct 7679 CAGTAACAAAAGCTGTTATTACTGTCCCGGCATATTTTAATGACTCTCAAAGACAAGCAA 7620 Query 451371 CTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAG 451430 | ||||| ||||| | ||||| || ||| | || || || ||||| |||||||| |||| Sbjct 7619 CAAAAGACGCAGGTAAAATTGCAGGATTAGAAGTACTACGTATTATAAATGAACCAACAG 7560 Query 451431 CAGCTGCTCTAGCATATGGACTAGG---AAAATCAAAAGAAACAGAAGaaaaaaaTATTT 451487 | || ||||| || ||||| ||| ||||||||| |||||| |||| Sbjct 7559 CCGCAGCTCTTGCTTATGGGTTAGACAAAAAATCAAATGAAACA------------ATTT 7512 Query 451488 TAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGG 451547 || | |||||||| ||||| || || ||| |||| | | | ||| ||||| | Sbjct 7511 TAATTTTTGATTTAGGTGGTGGTACATTTGACGTTTCTATTTTAGAAGTTGGGGATGGTG 7452 Query 451548 TATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602 ||||||||||| ||||| || |||| || |||| ||||| ||| |||| Sbjct 7451 TATTTGAAGTATTAGCAACGGCAGGAGATAGCCACTTAGGTGGTGATGATTTTGA 7397 Score = 86.0 bits (94), Expect = 2e-11 Identities = 241/369 (65%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 451988 GTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGT 452047 || ||||||||||||| ||| || ||| ||||| || | | ||| || | Sbjct 6990 GTTAATCCTGATGAAGTTGTAGCTGTTGGAGCTGCGATTAATGGAGC---------AGTT 6940 Query 452048 TCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGA 452107 | | || ||||| ||| |||| || | ||| |||| |||||||| ||||| | ||| Sbjct 6939 TTGGCTGGTGAAA--TTAA-AGATGTTTTATTATTAGACGTAACACCATTATCTTTAGGA 6883 Query 452108 GTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGT 452167 ||||||||| |||||| | ||||||| | ||| || || || | ||||| Sbjct 6882 GTTGAAACAATTGGTGGTTTAATGACTAGAATGATTGAAAGAAATACAACAATTCCAGCA 6823 Query 452168 AAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTG 452227 | ||| | | |||||||| ||||| || ||||||||| ||| |||||| || Sbjct 6822 ACAAAAACTGAAACATTTTCAACAGCCGAAGACAACCAACCAAAAGTAGATATTCATGTA 6763 Query 452228 TTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCA 452287 | |||| ||||| | | | |||||| || | ||||| | || ||| Sbjct 6762 CTACAAGGTGAACGCTTACTTGCTTCAGATAACAAAAGTTTAGGACATTTCGAACTTGGG 6703 Query 452288 AACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCA 452347 || ||| | || || || ||| || ||||||||| | || | |||| | || ||| Sbjct 6702 AATATTTCAGCTGCCCCTAGAGGAGTACCACAAATTGAAGTAACATTTGATATAGACGCA 6643 Query 452348 AATGGTATT 452356 |||| ||| Sbjct 6642 GATGGAATT 6634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975544746700880