Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2348 116 5e-21 >seq2348 Length=90098 Score = 116 bits (128), Expect = 5e-21 Identities = 328/497 (66%), Gaps = 10/497 (2%) Strand=Plus/Minus Query 11280 ATCAAATCTACCGGGGCGTAATAACGCATCGTCGAGTATATCGATACGGTTTGTTGCACC 11339 |||||| | || || | |||||| || || | ||||| | |||||| |||||| | Sbjct 28057 ATCAAAACGCCCAGGTCTTAATAAAGCTGAATCTAAAATATCTACACGGTTAGTTGCAGC 27998 Query 11340 TATAACAACAATTTCAGTTTCATTCTCGAAACCATCCATTTCTGTTAATAATTGGTTAAT 11399 || || | | || | | | || |||||||||||||| ||||| | || || | Sbjct 27997 AATTACTATGACCCCATTATTTGTTTCAAAACCATCCATTTCAGTTAAAAGCTGATTTAA 27938 Query 11400 TGTTTGTTCACGCTCATCGTT--TGCCGCAAAC-CCATTCATACTTCTTTTCTTACCAAT 11456 |||||||| ||||||||||| || | ||| ||| || | || | |||||| Sbjct 27937 CGTTTGTTCTCGCTCATCGTTACCACCTCCAACTCCA--GAT-CCCCTCTGTCTACCAAC 27881 Query 11457 CGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGT--GCCAATTCAAAT 11514 ||||| |||||||| ||||| ||||| || || | |||| | | || || ||| Sbjct 27880 TGCATCTATTTCATCAATAAAAATAATGCAAGG--GGTTTTTGCTTTAGCTCTTTTAAAA 27823 Query 11515 ATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAACGATGACCCCGAA 11574 | ||||| | |||| || |||| || || || | ||| || ||| ||| | ||| Sbjct 27822 AGGTCACGAATTCTTGAAGCCCCTATTCCGACGAATAATTCTACAAACTCTGATGCTGAA 27763 Query 11575 CACTGAATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGTGTTTTACCT 11634 || || ||||| || | || || || ||||| |||| | |||||||||| Sbjct 27762 CAACTAAAGAAAGGGACTTTTGCCTCGCCTGCAATAGCTTTAGCTAGTAATGTTTTACCT 27703 Query 11635 GTACCTGGTTTACCTGTTAATAATGCACCCCTTGGTATTTTAGCACCGGTACCAAAGTAC 11694 || || || |||| |||||| | || | || ||||| ||||| | | ||| Sbjct 27702 GTCCCAGGAGGTCCTGATAATAAAACTCCTTTAGGAATTTTTGCACCAACTCGAGTGTAA 27643 Query 11695 TTTTCTGGCGCCTTGAGAAAATCAACAATTTCTTCGAGCTCATCTTTCGCGCTATCTATA 11754 |||||| || | ||| ||||||||||| || || ||||| | ||| ||| Sbjct 27642 CGTTCTGGTTTTTTTAAAAATGTAACAATTTCTTGGAATTCTTCTTTTACTTCATCAATA 27583 Query 11755 CCCTGAACATCATCAAA 11771 || |||||||||||| Sbjct 27582 CCGGCAACATCATCAAA 27566 Score = 114 bits (126), Expect = 2e-20 Identities = 193/275 (70%), Gaps = 12/275 (4%) Strand=Plus/Plus Query 7454 GAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATA 7513 || || ||||| |||||||| ||||| |||| || || || ||| |||||||| | | Sbjct 7394 GAGTCAAAATCATCACCACCTAAGTGGCTATCTCCTGCCGTTGCTAATACTTCAAATACA 7453 Query 7514 CCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 || | ||| | ||| | ||||| ||||| ||||||||||| | |||||||| | Sbjct 7454 CCATCCCCAACTTCTAAAATAGAAACGTCAAATGTACCACCACCTAAATCAAAAAT---T 7510 Query 7574 ACGTTCGTATCGTCGTCTTTG--TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTG 7631 | | || || |||| || || || | || || || | ||| || || |||| Sbjct 7511 AAAATTGTTTC-----ATTTGATTTTTTGTCTAACCCATAAGCAAGAGCTGCGGCTGTTG 7565 Query 7632 GTTCATTAATAATACGAAGACAGTTC-AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 ||||||| |||||||| || | ||| | || ||||| | | || ||||| || ||| Sbjct 7566 GTTCATTTATAATACGTAG-TACTTCTAATCCTGCAATTTTACCTGCGTCTTTTGTTGCT 7624 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725 |||| ||| || || ||||| || |||||||| || Sbjct 7625 TGTCTTTGAGAGTCATTAAAATATGCCGGGACAGT 7659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635078337362400