Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq441 140 4e-28 seq1319 136 5e-27 >seq441 Length=67861 Score = 140 bits (154), Expect = 4e-28 Identities = 311/460 (68%), Gaps = 20/460 (4%) Strand=Plus/Minus Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 |||||| ||||| || ||||| || | || | || | || || | ||||| || || Sbjct 41009 ACGATCGAAGCGGCCCGGGCGGAGCAAGGCCTGGTCCAAGACGTCTGCACGATTGGTGGC 40950 Query 15944 GGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003 ||||||||| | || || | | | || || || |||||||| |||| |||||||| Sbjct 40949 GGCGATGACGATGATCCCAGGGTTGCCCTCGAAGCCGTCCATCTCGGTCAGCAGCTGGTT 40890 Query 16004 AATAGTTTGTTCCCGTTCATCATTCGCT--GGCATACCACCAGCACTGCGTTGCTTTCCC 16061 | || || ||||| || || ||| || |||| | || || | ||| || ||| Sbjct 40889 CAGGGTCTGCTCCCGCTCGTCGTTCCCTCCGGCAAA--GCCCGCCCCGCGCTGACGGCCC 40832 Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATG----GTTGATTTTCGCGAGCGACTTC 16117 |||||||||||||| || || || | |||||||| ||| | ||||| | ||| Sbjct 40831 ACGGCATCAATCTCGTCGATAAAAATGATGCATGGCGCGTTCTTCTTCGCCTG----TTC 40776 Query 16118 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG---C 16174 || | ||| || |||||| ||| ||||| || ||||||||||| ||||| | | | Sbjct 40775 GAACATATCGCGCACACGCGAGGCACCCACCCCCACAAACATCTCAACAAACTCCGAGCC 40716 Query 16175 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 16234 ||||| | ||||||||| || || || ||||| | |||| || || || || Sbjct 40715 GGCGGCCGA---GATGAAGGGCACGCCCGACTCCCCCGCGACGGCTTTAGCCAGCAGTGT 40659 Query 16235 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-ACTTC 16293 ||||||||| || || || | | || | || || || ||||| ||||| || || Sbjct 40658 CTTACCCGTCCCGGGGGGTCCGTCCAAGATCACCCCGCGAGGGATCTTTGCGCCTACGTC 40599 Query 16294 CAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 | |||| | || || | ||| || || || || | ||| Sbjct 40598 C-GTGTATTTTTCGGGGTTCTTGAGGAAGTCAACTACCTC 40560 >seq1319 Length=24917 Score = 136 bits (150), Expect = 5e-27 Identities = 321/479 (67%), Gaps = 7/479 (1%) Strand=Plus/Minus Query 111933 CCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGG--GC--GTCG 111988 || ||||| | || || ||| ||| |||||||| || |||| | || || | | Sbjct 9537 CCCATGCTCAGGGTCTTCGACGTCACGGCGCGCTACGTGGACCAGGGGGGAGGCAAGAGG 9478 Query 111989 CAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGA 112048 | |||| || | || |||| || ||||| ||||||||||| ||| | || | || || Sbjct 9477 CCAGGGGCCTTTGCCA-TCTACCTGGAGCCGTGGCACGCGGACATCTTTGAAGTGCTGGA 9419 Query 112049 GTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTG 112108 |||| ||||| || | |||||||||||| ||| |||||||||| | || || Sbjct 9418 CCTGCGGAAGAACCACGGAAAGGAGGAGGCGCGGGCCCGGGATCTCTTCTATGGACTATG 9359 Query 112109 GATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCC 112168 |||||| || || |||||| |||| || |||||| | | | ||||| ||| | ||||| Sbjct 9358 GATTCCCGACCTGTTCATGGAGAGGGTGGAGGAGGATAGGACCTGGTCCCTCATGTGTCC 9299 Query 112169 AGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAA 112227 || || ||||||||| | || |||| || ||| || | ||| || || Sbjct 9298 CGATCAGTGCCCCGGTCTCGCGGACTGCC-ACGGCCAGGCCTTCCGGGACCTATATTTAA 9240 Query 112228 AGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTA 112287 | ||||| ||| | || | | ||| |||| ||| || ||||| || | Sbjct 9239 AATACGAACGAGAGGGCCGAGTCAAGAAGACAGTGCGTGCTCAGGACTTGTGGTTTGCCA 9180 Query 112288 TTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACC 112347 | | | || || | ||||| || || || || ||||| ||||| ||||| || |||| Sbjct 9179 TCTTGGACTCGCAGATTGAGACGGGCACGCCCTACATGCTGTACAAGGACGCTTGCAACC 9120 Query 112348 AAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATC 112406 ||||| || ||| |||| ||||| |||||| ||||| || || || || ||| Sbjct 9119 TGAAGAGCAACCAACAGAACTTGGGCACCATCAAGTCATCCAATCTGTGCACCGAGATC 9061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620689171339200