Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2149 145 9e-30 seq1319 138 1e-27 seq441 120 4e-22 seq2348 84.2 3e-11 >seq2149 Length=43014 Score = 145 bits (160), Expect = 9e-30 Identities = 525/813 (65%), Gaps = 29/813 (4%) Strand=Plus/Minus Query 110329 GTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGA 110388 ||||| || | || ||||| |||| ||||| || ||| |||||||||| ||| Sbjct 34141 GTGTACTCGATGATCTCCGTGCACAGATTGGATGATTTGATGGTGCCCAAGTTCTGCTGG 34082 Query 110389 TTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGT 110448 || ||||| |||||| || ||||| | |||||||| || || || || ||| ||| Sbjct 34081 TTTGATTTCAGGTTGCAGGCGTCCTTGAACAGCATGTAAGGCGTGCCTGTCTCCACCTGG 34022 Query 110449 GACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGAC--AGTTGCGTTAGCGAGACCTT 110506 || | ||||| || ||| | || || ||| | | | | || ||| | | || Sbjct 34021 GAGTCCAGAATCGCGAACCAGA-----GCTGCTGGGCCTTAATAACCTT-GCGTG-CTTT 33969 Query 110507 CC-----TCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAG 110561 || | |||||| ||| ||| | | | ||| |||| ||| |||| || | || Sbjct 33968 CCCACTCTTCTCGTAGCTGGCGTAGAGCTGGTTAAACTCCTCGCCGCACACGTCCGCCAG 33909 Query 110562 ACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCAT 110621 ||| || || ||| || || |||||||| | || | ||| || | | ||| Sbjct 33908 GCCCGGGCACTCGTTGGGGCAAAAAAGGGACCAGTCCCCGTCGCTCTCCACGCGCCGCAT 33849 Query 110622 GAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACC 110681 ||||||||| || |||| | || |||| || ||||| ||| || || | || Sbjct 33848 GAACAGGTCGGGCGTCCAGAGGGCGTAGAACAGATCACGTGCACGCTCCAACTCGTTGCC 33789 Query 110682 TTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGAC 110741 ||||| || || |||| || || | ||| || | ||||| || || || |||| Sbjct 33788 GTGGTTCTTACGCAGGTCCAGGAATTCAAAGATGTCTGCATGCCAGGGCTCTAGGTAGAT 33729 Query 110742 AGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAA 110798 |||| ||| ||||| || | || |||||| || ||||| || || | ||||| Sbjct 33728 GGCGAAGGAACCCTTGCGCTTGCCTCCGCCCTGGTCGACGTAGCGGGCCGTATCGTTGAA 33669 Query 110799 GACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTT 110858 || | ||||||||| | || || | ||| || || | || | ||| ||| | Sbjct 33668 AACGCGGAGCATAGGTACGATGCCGTTGGAGGTGCCGTTCGATCCACGAATGTAGGAGTC 33609 Query 110859 ATTGGCACGAATGTCGTGGATATGCATA--CCAATACCACCCGCCCACTTACTAATTTGT 110916 || ||||||| |||| ||| ||| ||||| |||||||| | || ||| Sbjct 33608 TCGCGCCCGAATGTTGTGG--ATGGATACGCCAATCCCACCCGCAAATTTGGAAATGGCA 33551 Query 110917 GCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGA 110976 || || | |||| || | || || || || || || || |||| ||| | || Sbjct 33550 GCGCATTGCTTGAGGGTGTCGTAGATGCCGTCGATGGAGTCCTCCTTCATGGTCAGGAGG 33491 Query 110977 AAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGA 111036 ||||| || || | || || || || || || |||||||| |||||||| || ||||| Sbjct 33490 AAGCAGGAGGAGAGTTGGGGCCGCGGTGTGCCGGCATTGAAAAGTGTAGGCGTAGCATGC 33431 Query 111037 ATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGG----AGGGTACATCTTT 111092 |||| || | ||||| ||||| || || || || | | || | ||||| Sbjct 33430 GTGAAAAGTTTGAGCGACATGAGATTGTAGGTCTCCAGCGCCGCGTCAATGTTC-TCTTT 33372 Query 111093 ACCGTGAATACCAATGGCAACTCGCATGAACAT 111125 ||| |||||||| || || ||||||| ||| Sbjct 33371 ---GTGGATACCAATTGCCACACGCATGATCAT 33342 >seq1319 Length=24917 Score = 138 bits (152), Expect = 1e-27 Identities = 371/564 (66%), Gaps = 5/564 (1%) Strand=Plus/Plus Query 110575 TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGA 110634 |||||||| | ||||||||| | | | ||||||| ||||||| |||||||||||| ||| Sbjct 9296 TCGGGACACATGAGGGACCAGGTCCTATCCTCCTCCACCCTCTCCATGAACAGGTCGGGA 9355 Query 110635 ATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGT 110694 ||||| | | |||| || || ||| || ||||| || | || ||||| || Sbjct 9356 ATCCATAGTCCATAGAAGAGATCCCGGGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGC 9415 Query 110695 AGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC- 110753 || |||| | || | ||| |||| |||||| || || || |||| || | || || Sbjct 9416 AGGTCCAGCACTTCAAAGATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCCCCT 9475 Query 110754 --CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATA 110811 | | | ||| |||||| || ||||| || ||| | | ||||||||||||||| Sbjct 9476 GGCCTCTTGCCTCCCCCCTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATG 9535 Query 110812 GGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATG 110871 || | | || | | || || || ||| |||| || | || || ||| Sbjct 9536 GGCACCAGACCGTTGCTCGTCCCCTTCGTGCCCTTAATGTAGGCGCCGTGCGCGCGGATG 9595 Query 110872 TCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGT 110931 | ||||| | || || || |||||| ||| || || || |||| | || Sbjct 9596 TTGTGGACCGAGAGGCCGATTCCCCCCGCCGCCTTGCTTATCACGGCGCACTGCTTCAGC 9655 Query 110932 GTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATC 110991 || | || |||||| | ||||| || || | |||| | || ||||| || |||||| Sbjct 9656 GTGTCGTAGATACCAACGATCGAGTCCGCTTGCATGGCCAGGAGGAAGCACGAGGACATC 9715 Query 110992 TGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT-TG 111050 || || | |||| ||||| | ||| || ||||| | || || |||||| || | | Sbjct 9716 TGCGGGAAACGCGTGCCCGCGTGGAAAAGAGTAGGGGAGGCGTGGATGAAC-CACTTGTT 9774 Query 111051 GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGC 111110 | ||| | ||| || || | |||| ||| | ||| | || || ||||||| ||| Sbjct 9775 GCTCATGAGCTCGTAGGTCTCCAAGGCGGCGGGCAGATCCTCTCCATGGATACCAAGGGC 9834 Query 111111 AACTCGCATGAACATATATTGAGG 111134 || |||| | ||| || || || Sbjct 9835 CACGCGCAGAAGCATGTACTGCGG 9858 >seq441 Length=67861 Score = 120 bits (132), Expect = 4e-22 Identities = 305/457 (67%), Gaps = 14/457 (3%) Strand=Plus/Minus Query 11502 ACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGC 11561 ||||||||| || || |||||||| | || | || | | || |||| || || || Sbjct 41009 ACGATCGAAGCGGCCCGGGCGGAGCAAGGCCTGGTCCAAGACGTCTGCACGATTGGTGGC 40950 Query 11562 GGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTT 11621 ||| ||||| | || |||| | ||||| |||||||| || || || |||||||| Sbjct 40949 GGCGATGACGATGATCCCAGGGTTGCCCTCGAAGCCGTCCATCTCGGTCAGCAGCTGGTT 40890 Query 11622 GATCGTCTGTTCACGCTCATCGTTGGAG--GGCATACCACCTGCCGAACGCTTCTTACCG 11679 | ||||| || ||||| ||||| |||| | | | ||| |||| || Sbjct 40889 CAGGGTCTGCTCCCGCTCGTCGTTCCCTCCGGCAAAGCCCGCCCCG--CGCTGACGGCCC 40832 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 || || |||||||| ||||| || | ||| || || ||| ||||||||||| Sbjct 40831 ACGGCATCAATCTCGTCGATAAAAATGATGCATGGCGCGTTCTTCTTCGCCTGTTCGAAC 40772 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG---CGGCA 11796 | || || |||||| || || || || || ||||||||||| || | | |||| Sbjct 40771 ATATCGCGCACACGCGAGGCACCCACCCCCACAAACATCTCAACAAACTCCGAGCCGGCG 40712 Query 11797 GAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 | | || |||||||| || ||||| || |||| |||| ||| || || ||||| Sbjct 40711 G----CCGAGATGAAGGGCACGCCCGACTCCCCCGCGACGGCTTTAGCCAGCAGTGTCTT 40656 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC-ACTTCCAA 11914 |||||| || || | || | | | | || || |||||||| || || || ||| Sbjct 40655 ACCCGTCCCGGGGGGTCCGTCCAAGATCACCCCGCGAGGGATCTTTGCGCCTACGTCC-G 40597 Query 11915 AGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTC 11951 ||| || || |||||||||||||| || | ||| Sbjct 40596 TGTATTTTTCGGGGTTCTTGAGGAAGTCAACTACCTC 40560 >seq2348 Length=90098 Score = 84.2 bits (92), Expect = 3e-11 Identities = 240/366 (66%), Gaps = 6/366 (2%) Strand=Plus/Minus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 ||| ||||| || || | | || ||| ||| | |||||| |||||||| || || || Sbjct 28057 ATCAAAACGCCCAGGTCTTAATAAAGCTGAATCTAAAATATCTACACGGTTAGTTGCAGC 27998 Query 11565 AATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGAT 11624 ||| |||| | ||| | | | || ||||| |||||||| || | |||||| || | Sbjct 27997 AATTACTATGACCCCATTATTTGTTTCAAAACCATCCATTTCAGTTAAAAGCTGATTTAA 27938 Query 11625 CGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCT---TACCGAC 11681 ||| ||||| ||||||||||| | | | ||| || | || | | ||| |||| || Sbjct 27937 CGTTTGTTCTCGCTCATCGTT--ACCACCT-CCAACTCCAGATCCCCTCTGTCTACCAAC 27881 Query 11682 AGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAG 11741 || || || ||||| || || | || || || || || || || ||||| Sbjct 27880 TGCATCTATTTCATCAATAAAAATAATGCAAGGGGTTTTTGCTTTAGCTCTTTTAAAAAG 27821 Query 11742 TTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACA 11801 ||||| | | || || | || ||||| | || || || | || || ||||| Sbjct 27820 GTCACGAATTCTTGAAGCCCCTATTCCGACGAATAATTCTACAAACTCTGATGCTGAACA 27761 Query 11802 CTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGT 11861 || ||| || || || | ||| || || || ||| ||| || | || ||||| || Sbjct 27760 ACTAAAGAAAGGGACTTTTGCCTCGCCTGCAATAGCTTTAGCTAGTAATGTTTTACCTGT 27701 Query 11862 ACCAGG 11867 ||||| Sbjct 27700 CCCAGG 27695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588925495308000