Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq2348 700 0.0 >seq2348 Length=90098 Score = 700 bits (776), Expect = 0.0 Identities = 729/953 (76%), Gaps = 6/953 (1%) Strand=Plus/Plus Query 179775 AACCGCCTCTATGTCGGTTGGTTCGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACT 179834 ||||| | || ||||||||||||| ||| | ||||| || || | || |||| || Sbjct 63551 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 63610 Query 179835 ATCTGCTTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAA 179894 | |||||||||| |||| |||||||| || || || || || |||||||| ||||||||| Sbjct 63611 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 63670 Query 179895 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCT 179954 || || ||||| ||||| | || || |||||||| ||| | ||||| ||| |||| | Sbjct 63671 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 63730 Query 179955 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGG 180014 || ||||| |||||| |||||||||| || | |||||||| || || | ||||| ||| Sbjct 63731 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 63790 Query 180015 CTGTATAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCC 180074 || || ||||||||||||| ||||||||| || || |||||| | | || | | | Sbjct 63791 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGC 63850 Query 180075 TACATGGGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGTA 180134 |||||||| ||||| ||||||||| || || || || ||||| || ||||| | |||| Sbjct 63851 TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTA 63910 Query 180135 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 180194 || | || |||||||| ||||||||| ||| |||||| | | || || |||| ||| Sbjct 63911 GCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAA 63970 Query 180195 GGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTT 180254 ||| |||||||| | ||||| | || || ||||| || ||||||| |||| | || Sbjct 63971 GGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTA 64030 Query 180255 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTC 180314 ||||||||||| |||||||| || |||||||| ||||| ||| || || || ||||| Sbjct 64031 TTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTG 64090 Query 180315 TTCGGCGGTTCACTGTTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGT 180374 || || || || | ||| |||||||| ||||| || || || ||| | | ||| Sbjct 64091 TTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGTAACATCTAGTTTAATCCGT 64150 Query 180375 GAAACCACTGAA-ACTGAGTCCCAG--AACTACGGTTACAAGTTTGGTCAAGAAGAAGAG 180431 ||| |||||| || | || | | |||||||||||||| ||||| ||||||||||| Sbjct 64151 GAA---ACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAA 64207 Query 180432 ACCTACAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCG 180491 || ||||||||||| |||||||| || ||||| || ||| | |||||||| || ||| Sbjct 64208 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGT 64267 Query 180492 TTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGG 180551 ||||||||||| ||| | | ||||||||| | || || ||||| || || || |||||| Sbjct 64268 TTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 64327 Query 180552 TTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAG 180611 || ||||| || || | ||||| |||||||||||| | ||||| |||||||||||||| Sbjct 64328 TTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACCAA 64387 Query 180612 TCCATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCT 180671 || | ||||| | |||||||||||| ||||||||||||| ||| | ||||||| ||| Sbjct 64388 TCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCT 64447 Query 180672 GGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGA 180724 | | | ||||||||||| |||||||| ||||| || ||||||||||| || || Sbjct 64448 GATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 64500 Score = 558 bits (618), Expect = 4e-154 Identities = 736/1015 (73%), Gaps = 4/1015 (0%) Strand=Plus/Minus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 |||||| | | ||||||||| | ||||| || || || || ||| | || ||||| || Sbjct 5099 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGT 5040 Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543 || | | ||||| || || | ||||||| |||| || ||| | || || ||||||||| Sbjct 5039 CTTTTATTATTTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTT 4980 Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGG-TGCTAATTTCCT 181602 ||||| || |||||||| || ||||| || ||||| ||| | ||||| ||| || ||| | Sbjct 4979 GTTACATCTTGGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTT 4921 Query 181603 TACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 181662 || | ||||| ||||| ||||| | |||||||||||| | | || | ||||| Sbjct 4920 AACTGTAGCTGTATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGG 4861 Query 181663 TCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGT 181722 || || || || || ||||| || ||| | ||| | || ||| | ||| ||||||| Sbjct 4860 ACCAGAGGCACAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGT 4801 Query 181723 GGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGG-CAATTTGAACTTGCTC 181781 || | || || || || | | || || || || | | | ||||||||| |||||| Sbjct 4800 CGCATTACATGGGGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTC 4742 Query 181782 GTCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCG 181841 |||| | || || || || || ||||| ||||| ||||| || ||||| || ||||||| Sbjct 4741 GTCTTGTAGGTATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCG 4682 Query 181842 TCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCG 181901 | |||||||| | ||||||||| | |||||| | |||||||||||||| || ||||| | Sbjct 4681 TTTCTGTATTCTTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTG 4622 Query 181902 GTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCA 181961 | || || || |||||||| ||||| | ||| | || || || ||||| ||||| || | Sbjct 4621 GAGTTGCAGCTATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTA 4562 Query 181962 ATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTC 182021 |||| ||||| ||||||||||| || || || | ||||| ||| || | |||||||||| Sbjct 4561 ATCCATTCCACATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTC 4502 Query 182022 ACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAG 182081 | || | || || || || || | | |||| ||||| || ||||| ||| | Sbjct 4501 ATGGAGCTACTGTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTG 4442 Query 182082 CATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGT 182141 | ||| |||| ||| ||||||||| ||||||||||| ||||||||| | ||||||| Sbjct 4441 CTTTCACACCAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGT 4382 Query 182142 CTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTG 182201 | || || || ||| |||| ||| || || | ||| | |||||||| ||| | |||| Sbjct 4381 CACAAATTTTTGGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTG 4322 Query 182202 TTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTC 182261 |||| || | ||| | ||||||||||| | ||||| | ||| | || | ||| | Sbjct 4321 TTCCAGTAACAGGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAA 4262 Query 182262 GTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGT 182321 | || |||||||||||||| ||||| | | ||| | ||||| ||||| || || || | Sbjct 4261 GAGCATATGACTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTT 4202 Query 182322 TCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATC 182381 |||| || || || || | || || |||||| | | ||||| | || || || | Sbjct 4201 TCTATACTAAAAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACC 4142 Query 182382 AACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 |||||||||| || ||||| ||||| ||||| || ||||| | || ||||| || Sbjct 4141 AACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 4087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610344458474400