Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2348 659 0.0 >seq2348 Length=90098 Score = 659 bits (730), Expect = 0.0 Identities = 715/943 (76%), Gaps = 4/943 (0%) Strand=Plus/Plus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCGTT 169503 |||||||| |||||| ||||||| || ||| | ||||| || || |||||| | Sbjct 63566 GGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATC 63625 Query 169504 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCT 169563 || ||||| ||||||||||| || |||||||| || ||| | |||||||| || || || Sbjct 63626 GCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCA 63685 Query 169564 TTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGA 169623 | || || || |||||||| ||| | ||||| ||| ||||| || |||||||| || Sbjct 63686 CTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGT 63745 Query 169624 CTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGT 169683 | |||||||||||| | |||||||| || |||| || |||||| | || || |||||| Sbjct 63746 ATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGT 63805 Query 169684 CCTTATCAGTTGGTAATCTTCCACTTCCTTATT-GGTATCTCAGCATACATGGGAAGACA 169742 ||||| || | ||| | || ||||| |||||| ||| | | ||||||||| | | Sbjct 63806 CCTTACCAACTTGTAGTATTACACTT-CTTATTAGGTGTAGCTTGCTACATGGGACGTGA 63864 Query 169743 GTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 169802 |||||||| ||| | ||||| |||||||||||||| | || || | ||| || || Sbjct 63865 ATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCC 63924 Query 169803 AGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGA 169862 |||| |||| ||| || ||||||||| | |||||| | || || ||| |||||||| Sbjct 63925 AGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGA 63984 Query 169863 TGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCA 169922 ||||||||| |||||||||| |||||||||||||| ||||| || ||||||||||| || Sbjct 63985 TGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACA 64044 Query 169923 TAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTT 169982 |||||||| ||||| || ||||| ||||| || || || || |||| || |||||||| Sbjct 64045 CAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTT 64104 Query 169983 ATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCA 170042 |||| |||||||||||||| ||||| || || | ||||| | ||||| ||| Sbjct 64105 ATTCAGTGCAATGCATGGTTCTCTTGTAACATCTAGTTTAATCCGTGAAACTGAAGACGG 64164 Query 170043 AGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGC 170102 | || ||||| ||||| || || ||||||||||||||||| |||||||| ||||| Sbjct 64165 TGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGC 64224 Query 170103 AGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAG 170162 ||||||||||||||||| ||| | |||||||| || || |||||||||||| | Sbjct 64225 TGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGC 64284 Query 170163 TCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTAT 170222 | ||||||||||| |||| | || || |||||| || | |||||||| || | || || Sbjct 64285 TTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAAT 64344 Query 170223 CTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGAT-GCTA 170281 ||||||||||||||||||| || || |||||||| |||||||||||||||||| || | Sbjct 64345 TAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCA 64404 Query 170282 ACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAG 170341 | || | || || |||| ||| || | ||| | || | || |||||||||| Sbjct 64405 A-GGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAG 64463 Query 170342 TTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384 | ||||| ||| | || || ||||||||||| ||||| |||| Sbjct 64464 TAATGCACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGC 64506 Score = 596 bits (660), Expect = 2e-165 Identities = 752/1029 (73%), Gaps = 27/1029 (3%) Strand=Plus/Minus Query 170541 GACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGTCTTTTACTTCTG 170600 || ||||||||||| |||||||||| ||||| || || ||||| ||||||||| | | Sbjct 5087 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 5028 Query 170601 CCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTCGTTACATCATGG 170660 || |||| || || | ||||| ||||| ||| ||||| || |||||||| ||| Sbjct 5027 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 4968 Query 170661 TATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTAACAGCAGCAGTT 170720 || |||||||| | ||||| || || | |||||||| |||||| |||| | ||| || Sbjct 4967 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAACTTCTTAACTGTAGCTGTA 4908 Query 170721 TCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGACCTGAAGCACAA 170780 || ||||||| | ||||||||| | | || | |||||||| || |||||| Sbjct 4907 TCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACAA 4848 Query 170781 GGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTAGCATTACATGGA 170840 || ||| ||||||| | ||| | || || ||||||| ||||| ||||||||||| Sbjct 4847 GGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGGG 4788 Query 170841 GTCTTTGGACTCATAGGTTTCATGCTCA-GACAATTTGAGATCGCAGGACTTGTAGGCAT 170899 | |||||| | || || ||| || | | |||||||||| || || | |||||||| || Sbjct 4787 GCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTAT 4729 Query 170900 CAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTCT 170959 | || || || ||| | ||||| || | ||||||||| ||| | | || | Sbjct 4728 TCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCTT 4669 Query 170960 GATCTATCCACTAGGTCA-GCACAGTTGGTTCTTCGCACCATCATTCGGTGTCGCAGCAA 171018 |||||||| |||| || ||| ||||||||||| || || || || || ||||| | Sbjct 4668 AATCTATCCTTTAGGACAAGCA-AGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTA 4610 Query 171019 TTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACA 171078 |||| || | | |||||| ||||||||||||| ||| ||| | |||||||| |||| Sbjct 4609 TTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACA 4550 Query 171079 TGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCATGGTGCAACAG 171138 |||||||||| |||||||| ||||||| ||| |||||| ||| |||||||| || || | Sbjct 4549 TGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTG 4490 Query 171139 TGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATTCAAAGCACAA 171198 | | |||||||| | ||||| | | || ||| ||| | Sbjct 4489 TAGAAAACACATTATTCGAAGA------TGGTGATGCTGCGAAT---------------A 4451 Query 171199 CATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATTACAGCAAACA 171258 |||||||||| || || ||||| |||||||||||| ||| | ||||| |||| Sbjct 4450 CATTCCGTGCTTTCACACCAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACA 4391 Query 171259 GATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTACACTTCCTTA 171318 ||||||||||||| || |||||| ||||||| ||||||||| | | | || ||| | | Sbjct 4390 GATTCTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCA 4331 Query 171319 TGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCAC 171378 |||| || ||||| || | ||| | |||||| ||| | ||||| |||||| ||||| Sbjct 4330 TGTTATTTGTTCCAGTAACAGGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCAT 4271 Query 171379 TTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGT 171438 | ||| | |||||||| || ||||||||||||||| | | ||||| ||||| ||||| | Sbjct 4270 TAAACTTAAGAGCATATGACTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAAT 4211 Query 171439 TCGAGACTTTCTACACTAAGAATATACTTCTT-AATGAAGGTATGAGAGCATGGATGTCA 171497 | || |||||||| ||||| ||||| ||| || || |||||||| ||| |||||||| | Sbjct 4210 TTGAAACTTTCTATACTAAAAATAT-CTTATTAAACGAAGGTATTAGATCATGGATGGCC 4152 Query 171498 TCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCAAGAGGTAAC 171557 || |||||||||||||| || || ||||||||||| || || |||||| | || ||| Sbjct 4151 GCACAGGACCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAAC 4092 Query 171558 GCACTTTAA 171566 || |||||| Sbjct 4091 GCCCTTTAA 4083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579163132502400