Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq2348 700 0.0 >seq2348 Length=90098 Score = 700 bits (776), Expect = 0.0 Identities = 733/956 (77%), Gaps = 10/956 (1%) Strand=Plus/Plus Query 167890 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 167949 ||||| | || ||||||||||||| || | ||||| || || | || |||| || Sbjct 63551 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 63610 Query 167950 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 168009 | ||| |||||| |||| ||| |||| || || || || || ||||| || ||||||||| Sbjct 63611 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 63670 Query 168010 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTCCCTTCT 168069 || || ||||| ||||| | || || |||||||| ||| | ||||| ||| | || | Sbjct 63671 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 63730 Query 168070 TCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGG 168129 ||||| |||||||| |||||||||| || | |||||||| || || | || || ||| Sbjct 63731 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 63790 Query 168130 TTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTCATCG--GTATCTATG 168187 | || ||||||||||||| |||||| ||||| || |||||| | | | ||| || || Sbjct 63791 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 63849 Query 168188 CATACATGGGACGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTG 168247 | |||||||||||||||||||||||| || |||||||| |||||||| ||||| | | Sbjct 63850 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 63908 Query 168248 TTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTC 168307 | || | ||| || ||||| |||||||| |||||||||||| || | || || |||| | Sbjct 63909 TAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGAC 63968 Query 168308 AAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGG 168367 ||||||| |||||||||| ||||| | || ||||| || || ||||||| |||||| | Sbjct 63969 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAG 64028 Query 168368 TCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGG 168427 | |||||||| || ||||| ||||| ||||| || ||||||||| || |||||||| | Sbjct 64029 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 64088 Query 168428 TATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTA 168487 | |||||||| ||| || ||||| ||||| || | | || || ||| | | | Sbjct 64089 TGTTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGTAACATCTAGTTTAATCC 64148 Query 168488 GAGAGACGACTGAA-AC--CGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAG 168544 | || |||||| || | ||| |||||||||||||| || ||||||||||||| Sbjct 64149 GTGA---AACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAG 64205 Query 168545 AAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTT 168604 |||| |||||||||||||| || || |||||||| || ||||| |||||||||||||| Sbjct 64206 AAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAA 64265 Query 168605 CATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCT 168664 ||||||||||| || | || ||||||||| | ||||| ||||| ||||| || |||| Sbjct 64266 GTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCT 64325 Query 168665 GGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACC 168724 |||| || || ||||| | ||| |||||||||||| | ||||| ||||||||||||| Sbjct 64326 GGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACC 64385 Query 168725 AGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCG 168784 | || | ||||| | || ||||||||| | ||||| ||||| || || | ||||| | Sbjct 64386 AATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTG 64445 Query 168785 CTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAT 168840 ||| | | ||||||||||| ||||| || |||||||| ||||||||||| || ||| Sbjct 64446 CTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 64501 Score = 605 bits (670), Expect = 3e-168 Identities = 738/1004 (74%), Gaps = 2/1004 (0%) Strand=Plus/Minus Query 169317 TCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGTCTACTTCTTC 169376 ||||||||||| | ||||| || || || ||||| ||||||||||| ||||| | | Sbjct 5089 TCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTAT 5030 Query 169377 TTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTTGTTACTTCCT 169436 |||| || || | |||||| |||| || ||| | || ||||| | |||||||| || | Sbjct 5029 TTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTT 4970 Query 169437 GGTACACCCACGGACTCGCTTCCAGTTACTTAGAAGGCGCTAACTTCCTCACTGCTGCTG 169496 ||||||| || ||| | ||||| ||||||||| || |||||| | |||| |||| Sbjct 4969 GGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAACTTCTTAACTGTAGCTG 4910 Query 169497 TCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCAC 169556 | |||||||| | |||||| || ||| || |||| ||||||| ||||| |||| Sbjct 4909 TATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCAC 4850 Query 169557 AAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATG 169616 |||| ||||| ||| ||| |||| | ||||| | |||| ||||| ||| | |||| Sbjct 4849 AAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATG 4790 Query 169617 GTGCATTTGCATTGATTGGTTTCATGCTTAGG-CAGTTTGAATTGGCACGTCTTATTGGC 169675 | ||||||| ||| ||||| ||| || ||| | || |||||| | || |||||| | || Sbjct 4789 GGGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGT 4731 Query 169676 ATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTT 169735 || ||||| |||||||| |||||||| || || ||||| || ||||| || ||| || Sbjct 4730 ATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTC 4671 Query 169736 CTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCA 169795 | ||||| || | ||||| | |||||||||||||| |||||||| |||| Sbjct 4670 TTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCT 4611 Query 169796 ATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCAC 169855 || ||| | ||||| || ||| | ||||| ||||| |||||||| | |||||||||||| Sbjct 4610 ATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCAC 4551 Query 169856 ATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACA 169915 |||||||||||||||||||| || || || ||| | | ||||| || ||||| | ||| Sbjct 4550 ATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACT 4491 Query 169916 GTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCG 169975 ||||| |||||||| | ||||| ||||| || ||||| ||| || || | Sbjct 4490 GTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCA 4431 Query 169976 ACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 170035 ||||| |||||| |||||||| ||||| || || ||| | |||||||| || || || Sbjct 4430 ACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCACAAATTTTT 4371 Query 170036 GGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATG 170095 ||| |||| ||||||||||| |||||||||||||| |||||||| ||||| || || | Sbjct 4370 GGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACA 4311 Query 170096 GGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGAT 170155 ||| | |||||| ||| |||| || | || | || | || | | || || || Sbjct 4310 GGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGAC 4251 Query 170156 TTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAA 170215 || || ||| ||| | | ||||| ||||||||||||||||| || ||||| || ||| Sbjct 4250 TTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAA 4191 Query 170216 AACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGAA 170275 || ||| |||| || ||||| || | ||||| |||| | || |||||||||||| Sbjct 4190 AATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAA 4131 Query 170276 AACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 || || | |||||||| || ||| | || | || ||||| || Sbjct 4130 AATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 4087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574424338888800