Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq2348 758 0.0 >seq2348 Length=90098 Score = 758 bits (840), Expect = 0.0 Identities = 762/983 (78%), Gaps = 10/983 (1%) Strand=Plus/Plus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 |||||| ||| | ||| |||| | ||||| | || | ||||||||||| ||| | Sbjct 63524 TTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTA 63583 Query 163845 ATGATCCCTACGCTGCTTGCAGCAACCATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 163904 ||||||||||| | | |||| || | ||| |||||| |||| ||| |||| || || Sbjct 63584 ATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCT 63643 Query 163905 CCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACAAC 163964 || || || ||||||||||| |||||||| || || || || || | || || |||||| Sbjct 63644 CCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAAC 63703 Query 163965 ATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCATT 164024 || ||| | ||||| ||| |||| || || || |||||| ||||||||||||| || Sbjct 63704 ATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTT 63763 Query 164025 TGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCGTC 164084 |||||||| || || | || ||||||||||||||||||||||||| ||||||||| || Sbjct 63764 TGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTA 63823 Query 164085 TTCCACTTCCTGATCG--GTATCTATGCATACATGGGTCGTGAGTGGGAACTGTCTTACC 164142 || |||||| | | | ||| || ||| |||||||| ||||| |||||||| |||| Sbjct 63824 TTACACTTCTTATTAGGTGTAGCT-TGC-TACATGGGACGTGAATGGGAACTTAGCTACC 63881 Query 164143 GTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCG 164202 || | || |||||||||||||||| || |||| ||| || || || || |||||| | Sbjct 63882 GTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTG 63941 Query 164203 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCA 164262 |||| ||| | | || || |||| |||||| |||||||| | ||||| | || | Sbjct 63942 CAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTA 64001 Query 164263 TCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACC 164322 ||||||| || ||||||| |||||| || ||||||||||| |||||||| || ||||||| Sbjct 64002 TCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACC 64061 Query 164323 CCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACG 164382 | ||||||||| || |||||||| || ||||| || ||| | |||||||||||||| | Sbjct 64062 CATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCATG 64121 Query 164383 GTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAA-ACTGAGTCCCAG--AACT 164439 ||||||| || || ||| | | |||||| || ||| || | || | | |||| Sbjct 64122 GTTCTCTTGTAACATCTAGTTTAATCCGTGAA---ACTGAAGACGGTGTATCTGCTAACT 64178 Query 164440 ATGGTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACT 164499 | |||||||| ||||| |||||||||||||| |||||||| || || || |||||||||| Sbjct 64179 ACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACT 64238 Query 164500 TTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCC 164559 |||| ||| | |||||||||||||| ||||||||||| ||| | || ||||||||| Sbjct 64239 TTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCT 64298 Query 164560 TTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCAT 164619 | ||||| ||||| ||||| || |||||||| || || ||||| || ||| ||||||| Sbjct 64299 TAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCAT 64358 Query 164620 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCA 164679 ||||| | ||||| |||||||||||||| || | | ||| | || ||||||||| ||| Sbjct 64359 TCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGTGTGATCA 64418 Query 164680 ACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTA 164739 |||||||||| ||| || ||||||| |||| | | ||||||||||| |||||||| |||| Sbjct 64419 ACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTA 64478 Query 164740 ACGCTCACAACTTCCCTCTGGAT 164762 |||| |||||||||||||| ||| Sbjct 64479 ACGCGCACAACTTCCCTCTAGAT 64501 Score = 535 bits (592), Expect = 5e-147 Identities = 727/1006 (72%), Gaps = 6/1006 (1%) Strand=Plus/Minus Query 165204 TCGATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTT 165263 ||||||||||| | ||||||||||||||||| ||| |||||||||| || ||| | | | Sbjct 5089 TCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTAT 5030 Query 165264 TTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTT 165323 |||| || || | |||||| |||| || ||| | || || |||||||| | || || Sbjct 5029 TTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTT 4970 Query 165324 GGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG-TGCAAACTTTCTTACTGCGGCA 165382 |||| || || || || || ||| || | ||||| ||||| ||| | |||| || Sbjct 4969 GGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAA-CTTCTTAACTGTAGCT 4911 Query 165383 GTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCT 165442 || || || || ||| | |||||||||||| | | | | ||||| || ||||| Sbjct 4910 GTATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCA 4851 Query 165443 CAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCAC 165502 ||||| ||||| | ||| | ||| | || ||| | ||| ||||||| || | || Sbjct 4850 CAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACAT 4791 Query 165503 GGGGCTTTCGCTCTAATTGGTTTCATGCTT-CGTCAGTTTGAATTAGCACGTCTCATCGG 165561 ||||| || | ||||||| ||| || || || || |||||| | || ||||| | || Sbjct 4790 GGGGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGG 4732 Query 165562 TATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTT 165621 ||| ||||| || ||||| ||||| || || || |||||||| || || ||| || || Sbjct 4731 TATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATT 4672 Query 165622 TCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGC 165681 | ||||| ||| | || ||| | |||||||| || ||||| ||| || || ||||| Sbjct 4671 CTTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGC 4612 Query 165682 AATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCA 165741 || ||| | ||||| | ||| ||||||| |||||||||||||| | ||||| || || Sbjct 4611 TATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCA 4552 Query 165742 TATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTAC 165801 ||||||||||| ||||| || | ||||||||| | | ||||| || ||||| | ||| Sbjct 4551 CATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTAC 4492 Query 165802 AGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTC 165861 ||||| || || | | |||||||||| | ||| ||||| ||| || ||| || | Sbjct 4491 TGTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGC-TTTCACAC 4433 Query 165862 TA-CTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCT 165920 | | ||| |||||||| || |||||||| || || ||| | |||||||| || || | Sbjct 4432 CAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCACAAATTT 4373 Query 165921 TCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTA 165980 | ||| |||| ||| ||| || | ||| | |||||||| ||| | |||||||| || | Sbjct 4372 TTGGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAA 4313 Query 165981 TGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATG 166040 ||| | ||||||||||| | ||||| | ||| | || | ||| | | || |||| Sbjct 4312 CAGGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATG 4253 Query 166041 ACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGA 166100 |||||||||| |||||| | | ||||| ||||| ||||| |||||||| ||||| || | Sbjct 4252 ACTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTA 4193 Query 166101 AAAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATG 166160 |||| || | || || |||||| || | | ||| |||| || || ||||| |||| Sbjct 4192 AAAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATG 4133 Query 166161 AGAACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 | || ||||| ||||| || || ||| | || | || ||||| || Sbjct 4132 AAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 4087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556877043698400