Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq2348 697 0.0 >seq2348 Length=90098 Score = 697 bits (772), Expect = 0.0 Identities = 750/987 (76%), Gaps = 8/987 (1%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||| ||| | || ||||| | ||| | | || | |||||||||||||| ||| Sbjct 63524 TTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTA 63583 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTTGCATTTATTGCTGCACCA 168610 |||||||| ||||||||||| || || ||||| | || || || || ||||| Sbjct 63584 ATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCT 63643 Query 168611 CCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAAC 168670 || || |||||||| || ||| | ||||| || || || | || | || ||||||||| Sbjct 63644 CCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAAC 63703 Query 168671 ATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATT 168730 || ||| ||||||| ||| ||||| ||| ||||| || ||| | |||||||||||| || Sbjct 63704 ATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTT 63763 Query 168731 TGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATC 168790 |||||||| || | | || || ||| | || || |||||||||||||| | ||| | Sbjct 63764 TGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTA 63823 Query 168791 TTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA-TTATCATACAG 168849 || |||||| || | || | || ||||||||| | | |||||| ||| | ||| | Sbjct 63824 TTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTTAGC-TACCG 63882 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 |||| ||| | |||||||| | || |||| ||||| |||||| |||||||| ||| Sbjct 63883 TTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGC 63942 Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969 ||||||| | | |||||| | || || ||| |||||||||||||||||| |||| || Sbjct 63943 AGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTAT 64002 Query 168970 TTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029 ||||| || |||||||||||||| |||||||||||||| ||||||||||||||||| || Sbjct 64003 CTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCC 64062 Query 169030 CTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGG 169089 ||||||||||| || || || ||| |||| ||||||||| ||||| ||||||||||| Sbjct 64063 ATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCATGG 64122 Query 169090 TTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGG 169149 ||| |||||||||||| | ||||| | || ||| || | | |||| ||||| || Sbjct 64123 TTCTCTTGTAACATCTAGTTTAATCCGTGAAACTGAAGACGGTGTATCTGCTAACTACGG 64182 Query 169150 TTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGG 169209 |||||| || || |||||||||||||| || || || || || ||||| || ||||| || Sbjct 64183 TTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGG 64242 Query 169210 TAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 | ||||||||||| || |||||||||||||||||| | | | ||||||||| |||| Sbjct 64243 ACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGC 64302 Query 169270 AGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 169329 | | ||||||||| || | |||||||| || | || || | |||||||||||||| Sbjct 64303 TGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAA 64362 Query 169330 CTTGAACGGATTTAACTTTAACCAATCAGTTGTAGAT-GTTAACG--GTAAGATCATTCC 169386 ||| |||||||| ||||| |||||||||||||| ||| | || | || ||||| Sbjct 64363 CTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGTGTGATCA---A 64419 Query 169387 TACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAA 169446 || |||| |||| | | ||| | || | | ||||||||||||||||| || ||||| Sbjct 64420 CACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAA 64479 Query 169447 CGCTCACAACTTCCCACTAGACTTAGC 169473 ||| ||||||||||| ||||| ||||| Sbjct 64480 CGCGCACAACTTCCCTCTAGATTTAGC 64506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564393199132800