Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2348 641 5e-179 >seq2348 Length=90098 Score = 641 bits (710), Expect = 5e-179 Identities = 710/940 (76%), Gaps = 10/940 (1%) Strand=Plus/Plus Query 171862 GGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTT 171921 |||||||||||||| | |||||||| || | ||||| || ||||||||| | Sbjct 63566 GGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATC 63625 Query 171922 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT 171981 || ||||| ||||||||||| || |||||||| || ||| | |||||||| || || || Sbjct 63626 GCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCA 63685 Query 171982 TTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGT 172041 | ||||| || |||||||| ||| | ||||| ||| ||||| || ||||| || ||| Sbjct 63686 CTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGT 63745 Query 172042 CTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGT 172101 | ||||||||||| | |||||||| || | ||||| |||||| | ||||| |||||| Sbjct 63746 ATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGT 63805 Query 172102 CCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAG 172161 ||||| || | ||| | || |||||| | | ||| | | ||||||||| | | Sbjct 63806 CCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAA 63865 Query 172162 TGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCT 172221 |||||||| ||| | ||||| ||| | || ||||| | ||||| | ||||| || Sbjct 63866 TGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCA 63925 Query 172222 GTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGAT 172281 ||| | |||||| ||| || ||| | | || ||| |||| || ||| ||||||||| Sbjct 63926 GTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGAT 63985 Query 172282 GGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCAT 172341 |||||||| |||||||||| ||||| |||||||| ||||| || ||||||||||| || Sbjct 63986 GGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACAC 64045 Query 172342 AACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTA 172401 |||||||| ||||| || ||||| ||||| || || || || ||||||| ||||||||| Sbjct 64046 AACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTA 64105 Query 172402 TTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAA--- 172458 ||| |||||||| |||||| | || |||||| | ||||| | || ||||||| Sbjct 64106 TTCAGTGCAATGCATGGTTCTCTTGTAACATCTAGTTTAATCCGTGA---AACTGAAGAC 64162 Query 172459 GCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTA 172518 | | ||| |||||||| ||||| || ||||||||||||||||| |||||||| ||| Sbjct 64163 GGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTA 64222 Query 172519 GCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGA 172578 || ||||||||||||||||| ||| | |||||||| || || ||||||||||||| | Sbjct 64223 GCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGT 64282 Query 172579 AGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGT 172638 | | ||||||||| |||| | || || |||||| || | |||||||| || | || Sbjct 64283 GCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGA 64342 Query 172639 ATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGAT-GC 172697 || | ||||||||||||||| | ||||| ||||||||||||||||||||||| ||| || Sbjct 64343 ATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGC 64402 Query 172698 TAACGGTAAGATTGTTC-CTACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGG 172756 || ||| | || || || |||| |||| || | ||| | || | ||||||||| Sbjct 64403 CAA-GGT-CGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGG 64460 Query 172757 AAGTTATGCATGAAAGAAATGCACACAACTTCCCATTAGA 172796 |||| ||||| ||| | || || ||||||||||| |||| Sbjct 64461 AAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 64500 Score = 536 bits (594), Expect = 1e-147 Identities = 750/1050 (71%), Gaps = 25/1050 (2%) Strand=Plus/Minus Query 172941 AAGAGGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGG 173000 ||||||| ||||| | | || ||||||||||| |||||||||||||||| || || Sbjct 5109 AAGAGGTCTATTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGG 5050 Query 173001 ATGGTCTGGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGG 173060 ||||| ||||||||| | | || || | ||| | | ||||| ||||| ||| Sbjct 5049 TTGGTCAGGTCTTTTATTATTTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGG 4990 Query 173061 AACTACCTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGC 173120 ||||| || |||||||| ||||| |||||||| | || ||||| || | || ||| Sbjct 4989 TACTACTTTTGTTACATCTTGGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATG 4930 Query 173121 AAACTTTTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTT 173180 ||||| ||||| | ||| || || ||||||| | ||||||||| | | || Sbjct 4929 CAACTTCTTAACTGTAGCTGTATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTT 4870 Query 173181 CCTTTGGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATG 173240 | |||||||| || |||||||| || |||||| | ||| | || ||| |||| Sbjct 4869 ATTATGGGGACCAGAGGCACAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATG 4810 Query 173241 GAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGA 173300 || ||||| ||||||||||| | |||||| | || || ||| | || || ||||| Sbjct 4809 GACTTTTGTCGCATTACATGGGGCATTTGGATTAATTGGATTCTGTTTACGACAATTTGA 4750 Query 173301 GATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGC 173360 || || | |||||||| || | || || || ||| | ||||| || | |||||| Sbjct 4749 AATTGCTCGTCTTGTAGGTATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGC 4690 Query 173361 AGTCTTCACTAGCATCTTTTTAATCTACCCACTAGGGCA-GCACAGTTGGTTCTTCGCAC 173419 ||| ||| | | || |||||||| || |||| || ||| ||||||||||| || | Sbjct 4689 AGTATTCGTTTCTGTATTCTTAATCTATCCTTTAGGACAAGCA-AGTTGGTTCTTTGCTC 4631 Query 173420 CTTCATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACA 173479 || || || || ||||| || || || | | |||||| ||||||||||||| ||| Sbjct 4630 CTAGTTTTGGAGTTGCAGCTATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACT 4571 Query 173480 TTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTAT 173539 ||| | |||||||| |||||||||||||| |||||||| ||||||| ||| || ||| Sbjct 4570 GGACACTTAATCCATTCCACATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTAT 4511 Query 173540 GTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTG 173599 ||| |||||||| || || || | |||||||| | |||| || || Sbjct 4510 CTGCAATTCATGGAGCTACTGTAGAAAACACATTATTCGAAG------------ATGGTG 4463 Query 173600 AAGGTAAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTT 173659 | | | || | || ||| | || || || ||||| ||||||||||| Sbjct 4462 ATGCTGCGAAT---------ACATTCCGTGCTTTCACACCAACACAATCAGAAGAAACTT 4412 Query 173660 ATAGTATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACA 173719 || ||| | ||||||||||||||||||||||| || |||||| | || ||||| |||| Sbjct 4411 ATTCAATGGTAACAGCGAACAGATTCTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACA 4352 Query 173720 AAAGATTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCA 173779 || | | | || ||| ||||||| || || || || | ||| | |||||| || Sbjct 4351 AACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAGGTTTATGGACAAGTTCTT 4292 Query 173780 TAGGTATCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAA 173839 | ||||| |||||| | ||| | ||| | |||||||| |||||||||||||||||| | Sbjct 4291 TTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGACTTTGTATCTCAAGAGCTTC 4232 Query 173840 GAGCAGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTT-AATGAA 173898 | ||||| ||||||||||| || || |||||||| ||||| ||||| ||| || || ||| Sbjct 4231 GTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAAATAT-CTTATTAAACGAA 4173 Query 173899 GGTATGAGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAA 173958 ||||| ||| |||||||| | | || ||||||||||| || || ||||| ||||| Sbjct 4172 GGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAAATTTTGTATTCCCAGAG 4113 Query 173959 GAAGTGTTACCAAGAGGTAACGCACTTTAA 173988 || || |||||| | || ||||| |||||| Sbjct 4112 GAGGTTTTACCACGTGGAAACGCCCTTTAA 4083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588000774609600