Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq2348 706 0.0 >seq2348 Length=90098 Score = 706 bits (782), Expect = 0.0 Identities = 730/953 (77%), Gaps = 6/953 (1%) Strand=Plus/Plus Query 162412 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 162471 ||||| | || ||||||||||||| || | ||||| || || | || |||| || Sbjct 63551 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 63610 Query 162472 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 162531 | ||| |||||| |||| ||| |||| || || || || || ||||| || ||||||||| Sbjct 63611 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 63670 Query 162532 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCT 162591 || || ||||| ||||| | || || |||||||| ||| | ||||| ||| ||||| | Sbjct 63671 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 63730 Query 162592 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 162651 || ||||| |||||| |||||||||| || | |||||||| || || | || || ||| Sbjct 63731 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 63790 Query 162652 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTCCACTTCCTGATCGGCATCTATGCC 162711 || || ||||||||||||| |||||| |||||||| |||||| | | || | | | Sbjct 63791 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGC 63850 Query 162712 TACATGGGACGTGAATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGCGTA 162771 ||||||||||||||||||||||| |||||| | || |||||||| ||||| | |||| Sbjct 63851 TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTA 63910 Query 162772 GCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 162831 || | ||| || || || || |||||| ||||| ||| | | || || |||| ||| Sbjct 63911 GCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAA 63970 Query 162832 GGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTC 162891 ||| |||||||| | ||||| || |||||| |||||| ||||||| |||| | || Sbjct 63971 GGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTA 64030 Query 162892 TTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTC 162951 ||||||||||| ||||||||||| ||||| || ||||| ||| ||||| || ||||| Sbjct 64031 TTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTG 64090 Query 162952 TTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGT 163011 || ||||| || | |||||||||||||| |||||| | || |||||| | ||||| Sbjct 64091 TTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGTAACATCTAGTTTAATCCGT 64150 Query 163012 GAGACGACTGAA-ACTGAGTCACAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAG 163068 || |||||| || | || | | ||||| |||||||| || || ||||||||||| Sbjct 64151 GA---AACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAA 64207 Query 163069 ACATACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCA 163128 || ||||||||||| || || || |||||||| || ||||| ||||||||||| ||| Sbjct 64208 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGT 64267 Query 163129 TTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 163188 ||||||||||| ||| | || ||||||||| | ||||| ||||| ||||| || |||||| Sbjct 64268 TTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 64327 Query 163189 TTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 163248 || || || ||||| | || |||||||||||| | ||||| |||||||||||||| Sbjct 64328 TTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACCAA 64387 Query 163249 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCA 163308 || | ||||| | || ||||||||| | ||||| ||||| ||| || | |||||||| Sbjct 64388 TCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCT 64447 Query 163309 GGTTTGGGTATGGAAGTTATGCACGAGCGCAATGCTCACAACTTCCCACTTGA 163361 | ||| ||||||||||| |||||||| || || || ||||||||||| || || Sbjct 64448 GATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 64500 Score = 565 bits (626), Expect = 3e-156 Identities = 736/1010 (73%), Gaps = 6/1010 (1%) Strand=Plus/Minus Query 163633 GATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGATTACTACTTCTT 163692 ||||||||| | || || |||||||||||||||||||||||||| || | || | || Sbjct 5087 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 5028 Query 163693 CCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTCGTTACGTCGTGG 163752 || || || | | | ||| ||||||| ||| | || ||||| ||||| ||||| || ||| Sbjct 5027 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 4968 Query 163753 TACACCCATGGACTGGCAACTTCCTATCTTGAGGG-TGCTAATTTTCTCACAGCGGCTGT 163811 ||||| |||||| | || |||| || | ||||| ||| | || | | || | ||||| Sbjct 4967 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAACTTCT-TAACTGTAGCTGT 4909 Query 163812 GTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTCTC-TGGGGTCCTGAGGCTC 163870 ||||| ||||| | |||||||||||| || |||| | ||||| || ||||| | Sbjct 4908 ATCAACACCTGCAAATAGTATGGGTCATTCA-TTGATCTTATTATGGGGACCAGAGGCAC 4850 Query 163871 AGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACG 163930 | || ||||| || ||| | ||| | || ||| | |||| |||||| ||| | || | Sbjct 4849 AAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATG 4790 Query 163931 GAGCCTTTGCTCTCATTGGTTTCATGCTT-CGGCAATTTGAACTTGCTCGCCTGATTGGA 163989 | || |||| | ||||| ||| || || || ||||||||| ||||||| || | || Sbjct 4789 GGGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGT 4731 Query 163990 ATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTT 164049 || | || || ||||| ||||| || || || ||||| || || |||||| ||| || Sbjct 4730 ATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTC 4671 Query 164050 CTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCA 164109 | ||||| ||| | || ||| ||||||||||||| ||||| ||||||||| ||||| Sbjct 4670 TTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCT 4611 Query 164110 ATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCAT 164169 || ||| ||||||| |||||| | ||||| || ||||||||||| | || || ||||| Sbjct 4610 ATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCAC 4551 Query 164170 ATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACA 164229 |||||||| || || || || |||| || ||| | ||||||| ||||| |||| || Sbjct 4550 ATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACT 4491 Query 164230 GTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCG 164289 || ||||| ||||| | |||||||| || || || || || || || | Sbjct 4490 GTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCA 4431 Query 164290 ACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 164349 ||||| |||||| |||||||| ||||| || || ||| | |||||||| || || || Sbjct 4430 ACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCACAAATTTTT 4371 Query 164350 GGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATG 164409 |||||||| ||||||||||| || ||||||||||| |||||||| ||||| || || | Sbjct 4370 GGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACA 4311 Query 164410 GGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGAT 164469 ||| |||||||| ||| |||| || | || | || | || | | || || || Sbjct 4310 GGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGAC 4251 Query 164470 TTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTTTCTATACCAAG 164529 |||||| ||||||| || | ||||| |||||||| || || || ||||||||||| || Sbjct 4250 TTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAA 4191 Query 164530 AACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGACCAGCCAGGAGAA 164589 || |||||||| |||||||| | | ||||| | || || ||||| ||| ||| Sbjct 4190 AATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAA 4131 Query 164590 CGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTTAATA 164639 ||||| |||||||| || || | || | || || || |||||||| Sbjct 4130 AATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATA 4081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557536187172000