Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq2348 652 0.0 >seq2348 Length=90098 Score = 652 bits (722), Expect = 0.0 Identities = 734/989 (74%), Gaps = 6/989 (1%) Strand=Plus/Plus Query 167079 TGGGAATCCTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTC 167138 ||||| ||| ||| |||| | || ||||| | |||||| | || ||||||||||| Sbjct 63515 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 63574 Query 167139 GGCGTTCTGATGATCCCTACGTTGCTTGCAGCAACCATCTGTTTCATCATCGCCTTCGTC 167198 || ||| | ||||||||||| || | |||| || | ||| ||||||||||| ||| || Sbjct 63575 GGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 63634 Query 167199 GGTGCTCCTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTAT 167258 | || ||||| || || |||||||||||||| |||||||| ||||| ||||| | || Sbjct 63635 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 63694 Query 167259 GGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTC 167318 || |||||||| ||| | ||||| ||| |||| |||||| ||||||||| |||||||| Sbjct 63695 GGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTC 63754 Query 167319 TATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAA 167378 || || | |||||||| || | | ||||| ||| | ||||| |||||||||| |||| Sbjct 63755 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAA 63814 Query 167379 CTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTC 167438 || ||||| || |||||| | | || | | ||| ||||| ||||| |||||||| Sbjct 63815 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 63874 Query 167439 TCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCA 167498 |||||| | || |||||||| ||||| | || || | ||| |||||||| |||||| Sbjct 63875 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 63934 Query 167499 GCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCT 167558 ||| ||| |||||| | | || || |||| |||||| |||||||| | |||||| Sbjct 63935 GCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCT 63994 Query 167559 CTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTG 167618 | |||||||||||||| ||||||| |||| | || ||||||||||| |||||||| || Sbjct 63995 TTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 64054 Query 167619 ATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCA 167678 |||||||| ||||||||| || |||||||| || || || || ||| | ||||||||| Sbjct 64055 ATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCA 64114 Query 167679 ATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAA-ACTGAGTCCCA 167737 ||||| |||||||| || || ||| | | |||||| || ||| || | || | Sbjct 64115 ATGCATGGTTCTCTTGTAACATCTAGTTTAATCCGTGAA---ACTGAAGACGGTGTATCT 64171 Query 167738 G--AACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCAT 167795 | ||||| |||||||| || || || |||||||| || || |||||||| ||||| || Sbjct 64172 GCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACAC 64231 Query 167796 GGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCAC 167855 |||||||| || || | ||||||||||||||| ||||||||||| || | | ||| Sbjct 64232 GGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACAC 64291 Query 167856 TTCTTCTTGGCAGCATGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNN 167915 |||||||| || || ||||| ||||| |||||||||| Sbjct 64292 TTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACA 64351 Query 167916 NNNNNATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAG 167975 ||||||| | ||||| |||||||||||||| || | ||||||| ||| Sbjct 64352 ATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGT 64411 Query 167976 GTTCTGCCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCAC 168035 || | |||||||| ||| | |||||||||||| | | ||||||||||| |||||| Sbjct 64412 GTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCAC 64471 Query 168036 GAGCGTAATGCTCACAACTTCCCTCTCGA 168064 || ||||| || |||||||||||||| || Sbjct 64472 GAACGTAACGCGCACAACTTCCCTCTAGA 64500 Score = 536 bits (594), Expect = 1e-147 Identities = 725/1005 (72%), Gaps = 4/1005 (0%) Strand=Plus/Minus Query 168493 TCGATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTT 168552 ||||||||||| | ||||| ||||||||||| ||| |||||||||| || ||| | | | Sbjct 5089 TCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTAT 5030 Query 168553 TTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTT 168612 |||| || || | |||||| |||| || ||| | || || ||| |||| || || || Sbjct 5029 TTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTT 4970 Query 168613 GGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAG 168672 |||| || || || || || ||| || | ||||| ||||| | |||| || | Sbjct 4969 GGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAACTTCTTAACTGTAGCTG 4910 Query 168673 TTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCAC 168732 | || || ||| || |||||||||||| | | | | ||||| || ||||||| Sbjct 4909 TATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCAC 4850 Query 168733 AAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACG 168792 |||| ||||| | ||| |||| | || ||| | ||| ||||||| || | || | Sbjct 4849 AAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATG 4790 Query 168793 GGGCTTTCGCTCTAATCGGTTTCATGCTT-CGTCAGTTTGAACTGGCACGTCTCATCGGT 168851 |||| || | |||| || ||| || || || || |||||| | || ||||| | ||| Sbjct 4789 GGGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGT 4731 Query 168852 ATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTT 168911 || ||||| || ||||| ||||| || || || |||||||| || || ||| || || Sbjct 4730 ATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTC 4671 Query 168912 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCA 168971 | ||||| ||| | || ||| | |||||||| || ||||| ||| || || |||| Sbjct 4670 TTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCT 4611 Query 168972 ATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCAT 169031 || ||||||||||| | ||| ||||||| ||||||||||||||||| |||||||| || Sbjct 4610 ATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCAC 4551 Query 169032 ATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACA 169091 ||||||||||||||||| ||||| || || || | | ||||| |||||||| | ||| Sbjct 4550 ATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACT 4491 Query 169092 GTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGC 169151 ||||| || || | | |||||||||| || ||||| ||| || ||| ||| | Sbjct 4490 GTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGC-TTTCACACC 4432 Query 169152 -ACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTT 169210 || || ||| || || ||||||||||| || || ||| | |||||||| || || || Sbjct 4431 AACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCACAAATTTT 4372 Query 169211 TGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTAT 169270 |||| |||| || ||| || | ||| | |||||||| ||| | |||||||| || | Sbjct 4371 TGGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAAC 4312 Query 169271 GGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGA 169330 ||| | ||||||||||| | ||||| | ||| | || | ||| | | || ||||| Sbjct 4311 AGGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGA 4252 Query 169331 CTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAA 169390 |||||| || |||||| | | ||||| ||||||||||| ||||| || ||||| || || Sbjct 4251 CTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAA 4192 Query 169391 GAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGA 169450 || ||| | || ||||||||| || | ||||| | || | || ||||| ||||| Sbjct 4191 AAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGA 4132 Query 169451 GAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 || ||||| ||||| ||||| || | || || || || ||||| Sbjct 4131 AAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 4087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560559927864000